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[187835_at]

Description F09E10.9 /REP_DB=WormBase Gene ID /WP=CE04345 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q19254 protein_id:AAB52490.1
Cluster 6grp_total > 48      4grp_total > 11      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 57.1
(0.3)
A 		28.4
(-3)
A 		36.5
(-2.1)
A 		79.9
(3)
A 		52
B 52.4
(-1.7)
A 		47.6
(-3)
A 		58.3
(-0.1)
A 		69.4
(3)
A 		22
C 52.1
(-1.1)
A 		80.6
(2.4)
A 		37.2
(-3)
A 		85.1
(3)
A 		48
avr 53.9
(-1.3) 		52.2
(-1.6) 		44
(-3) 		78.1
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 14.8
(-2.1)
A 		42.1
(0.1)
A 		14.1
(-2.2)
A 		6.6
(-2.8)
A 		3.8
(-3)
A 		77.8
(3)
A 		74
B 61.8
(3)
A 		23.9
(-1.1)
A 		6.1
(-3)
A 		15.6
(-2)
A 		17.6
(-1.8)
A 		37.5
(0.4)
A 		56
C 30.1
(1.9)
A 		5.3
(-2.8)
A 		7.3
(-2.5)
A 		4.5
(-3)
A 		19.1
(-0.2)
A 		36
(3)
A 		32
avr 35.6
(0.9) 		23.8
(-0.8) 		9.2
(-3) 		8.9
(-3) 		13.5
(-2.3) 		50.4
(3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 20.8
(3)
A 		6.2
(-3)
A 		9.5
(-1.6)
A 		11.7
(-0.7)
A 		15
B 16.7
(3)
A 		11.8
(-3)
A 		13.5
(-0.9)
A 		14.8
(0.7)
A 		5
C 17.3
(-0.5)
A 		23.2
(3)
A 		13
(-3)
A 		14.4
(-2.2)
A 		10
avr 18.3
(3) 		13.7
(-1.4) 		12
(-3) 		13.6
(-1.5) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 2.7
(-2.5)
A 		15
(1.7)
A 		3.1
(-2.3)
A 		1.7
(-2.8)
A 		1.1
(-3)
A 		18.9
(3)
A 		18
B 21.5
(3)
A 		8
(-1.1)
A 		1.5
(-3)
A 		4.1
(-2.2)
A 		7.1
(-1.3)
A 		14
(0.8)
A 		20
C 11.1
(2.5)
A 		1.6
(-2.6)
A 		1.9
(-2.5)
A 		0.9
(-3)
A 		6.2
(-0.1)
A 		12
(3)
A 		11
avr 11.8
(1.5) 		8.2
(-0.2) 		2.2
(-3) 		2.2
(-3) 		4.8
(-1.8) 		15
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187835_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18234
Sequence Type Exemplar sequence
Representative Public ID F09E10.9 NCBI
Target Description F09E10.9 /REP_DB=WormBase Gene ID /WP=CE04345 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q19254 protein_id:AAB52490.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171940, NM_171630
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000026368 ENSEMBL cdna:SNAP chromosome:CEL140:X:1513535:1517154:-1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171630 3/11 Cross Hyb Matching Probes A 
NM_171940 3/11 Cross Hyb Matching Probes A 
GENEFINDER00000026372 3/11 Cross Hyb Matching Probes None
F09E10.8a 3/11 Cross Hyb Matching Probes A 
F09E10.8b.2 3/11 Cross Hyb Matching Probes A 
F09E10.8b.1 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1515732-1517154(-) 75.33 75.33
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52489 Hypothetical protein F09E10.8a [Caenorhabditis elegans] ref|NP_741723.1| F09E10.8a [Caenorhabditis elegans] 1.0E-119
blast AAM54198 Hypothetical protein F09E10.8b [Caenorhabditis elegans] ref|NP_741722.1| F09E10.8b [Caenorhabditis elegans] 1.0E-119
blast CAE70012 Hypothetical protein CBG16426 [Caenorhabditis briggsae] 2.0E-80
Protein Domains
Database ID Description E-Value
Pfam IPR001060 EMBL-EBI Cdc15/Fes/CIP4 2.4E-9
Sequence
Target Sequence 
>C. ELEGANS:187835_AT
atgttccgttccggacgtgacacagtccgtctgtcgcgtgcatcgatggtcgacttgttt
cactcggcgtttgccacgaataacaataacgatcatcatcatcacaacaaccaccacaac
cacaaccacgggtatcaggaagatacggctagtcgaatttatgggacaaaggaccaacaa
ggtactctcaatgaatacactggaaaaggtatcgacctgctggagcggataatggcttac
tcaaaagaacgagccagcatcgagttggagtacagttctaagttgaaaaagttactagaa
attttcaaacattttccagatcttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTCCGTTCCGGACGTGACACAG 563 43 13 Antisense
CGGACGTGACACAGTCCGTCTGTCG 127 243 24 Antisense
TCTGTCGCGTGCATCGATGGTCGAC 641 607 42 Antisense
TCGATGGTCGACTTGTTTCACTCGG 698 601 55 Antisense
TTTCACTCGGCGTTTGCCACGAATA 146 671 70 Antisense
CACAACCACAACCACGGGTATCAGG 192 193 127 Antisense
GATACGGCTAGTCGAATTTATGGGA 169 419 154 Antisense
GACCAACAAGGTACTCTCAATGAAT 231 385 184 Antisense
GGTATCGACCTGCTGGAGCGGATAA 25 505 220 Antisense
GAACGAGCCAGCATCGAGTTGGAGT 254 347 259 Antisense
TTTCAAACATTTTCCAGATCTTCAA 323 673 315 Antisense
Sequence Source Affymetrix Proprietary Database