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[187834_at]

Description Y17G7B.16 /REP_DB=WormBase Gene ID /WP=CE19050 /CHR=2 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q9XXH8 protein_id:CAA19463.1
Cluster 6grp_total > 45      4grp_total > 27      6grp_cgc > 35      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 35.1
(-2.8)
P 		71
(2.2)
A 		33.9
(-3)
A 		77
(3)
A 		43
B 55
(3)
A 		53.3
(2.5)
A 		34.4
(-3)
A 		53.9
(2.7)
A 		21
C 47.1
(-0.3)
A 		46.5
(-0.5)
A 		38.5
(-3)
A 		57.4
(3)
A 		19
avr 45.7
(-0.8) 		56.9
(1.7) 		35.6
(-3) 		62.8
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 64.3
(3)
M 		22.2
(-3)
A 		63.5
(2.9)
P 		37.4
(-0.8)
A 		34.7
(-1.2)
A 		49
(0.8)
A 		42
B 43.7
(2)
A 		36.1
(0.9)
A 		51
(3)
A 		8.4
(-3)
A 		13.5
(-2.3)
A 		44
(2)
P 		43
C 42.8
(0.8)
A 		56.3
(2.2)
M 		11.7
(-2.5)
A 		64.3
(3)
P 		6.9
(-3)
A 		27.1
(-0.9)
A 		57
avr 50.3
(3) 		38.2
(0.7) 		42.1
(1.5) 		36.7
(0.4) 		18.4
(-3) 		40
(1.1) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 12.8
(0.6)
P 		15.4
(3)
A 		8.9
(-3)
A 		11.3
(-0.8)
A 		7
B 17.5
(3)
A 		13.2
(0.3)
A 		8
(-3)
A 		11.5
(-0.8)
A 		10
C 15.6
(3)
A 		13.4
(0.8)
A 		13.4
(0.8)
A 		9.7
(-3)
A 		6
avr 15.3
(3) 		14
(1.5) 		10.1
(-3) 		10.8
(-2.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 11.9
(1.1)
M 		7.9
(-3)
A 		13.8
(3)
P 		9.5
(-1.4)
A 		10.5
(-0.4)
A 		11.9
(1.1)
A 		6
B 15.2
(2.5)
A 		12
(1.1)
A 		12.4
(1.3)
A 		2.2
(-3)
A 		5.5
(-1.6)
A 		16.4
(3)
P 		14
C 15.9
(2.5)
A 		17.2
(3)
M 		3
(-2.7)
A 		12.9
(1.3)
P 		2.2
(-3)
A 		9.1
(-0.2)
A 		15
avr 14.3
(3) 		12.4
(1.6) 		9.7
(-0.4) 		8.2
(-1.5) 		6.1
(-3) 		12.5
(1.7) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187834_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2677
Sequence Type Exemplar sequence
Representative Public ID Y17G7B.16 NCBI
Target Description Y17G7B.16 /REP_DB=WormBase Gene ID /WP=CE19050 /CHR=2 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q9XXH8 protein_id:CAA19463.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027241(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027241 NCBI Caenorhabditis elegans CeNTaurin family member (cnt-1) (cnt-1) mRNA, complete cds. 11/11 None
GENEFINDER00000030411 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12082841:12089760:-1 11/11 None
Y17G7B.15a ENSEMBL cdna:known chromosome:CEL140:II:12072205:12088764:-1 gene:Y17G7B.15 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030330 4/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174848 2 1 NM_001027241 187834_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12083800-12089757(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y17G7B.15
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19463 Hypothetical protein Y17G7B.15a [Caenorhabditis elegans] ref|NP_001022412.1| CeNTaurin family member (cnt-1) [Caenorhabditis elegans] 0.0
blast CAA10734 centaurin beta 1A [Caenorhabditis elegans] 0.0
blast CAE73543 Hypothetical protein CBG21011 [Caenorhabditis briggsae] 0.0
blast CAA19463 Hypothetical protein Y17G7B.15a [Caenorhabditis elegans] ref|NP_001022412.1| CeNTaurin family member (cnt-1) [Caenorhabditis elegans] 1.0E-147
blast CAA10734 centaurin beta 1A [Caenorhabditis elegans] 1.0E-147
blast CAE73543 Hypothetical protein CBG21011 [Caenorhabditis briggsae] 1.0E-135
Protein Domains
Database ID Description E-Value
Pfam IPR001164 EMBL-EBI Human Rev interacting-like protein (hRIP) 3.2E-45
Pfam IPR002110 EMBL-EBI Ankyrin 2.7E-8
Pfam IPR002110 EMBL-EBI Ankyrin 1.9E-7
Pfam IPR002110 EMBL-EBI Ankyrin 0.92
Pfam IPR001849 EMBL-EBI Pleckstrin-like 2.6E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000030411 1 16-38
Sequence
Target Sequence 
>C. ELEGANS:187834_AT
tgcgatgaaagcttctccggcaatccattggcgtctacaacattccaaggattatcagaa
gcctatgcacacactgttaacctatttcgcacgtatttcgaccattcaaatgtggtcact
ttcacgaaactgtcgaatttcattaaaattgagctcacaaaagtggcagaatcccgtgca
cattttgagaatatgtcccaatcaatggatgatgcattagtcaaaaatgcgagtatttca
aggcaaaagcctgcagatgcgacagaagggcgaaatgcacttactgcggtcggcacttgc
ttcgcacacaccacactcgactacgtggcaaatattaatattgcacatgcacacaaggac
catatgattctcgatgcgttgtggacactggttcgcgaatcgtcggcgttcttctcaaaa
gggcacgccacgttcgacgagtggacagctgccgacaacggagcaatcgccgacacaatt
cagacatttgctgctaaatcgaagctcatcgaacgtaagatgcaggatgtacattcgctt
gttcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGATGAAAGCTTCTCCGGCAATC 116 579 451 Antisense
AATCCATTGGCGTCTACAACATTCC 184 167 472 Antisense
CACACACTGTTAACCTATTTCGCAC 140 195 518 Antisense
ATTTCGCACGTATTTCGACCATTCA 431 17 534 Antisense
AAGTGGCAGAATCCCGTGCACATTT 491 157 611 Antisense
GCGAAATGCACTTACTGCGGTCGGC 442 289 720 Antisense
GATTCTCGATGCGTTGTGGACACTG 153 433 816 Antisense
TGTGGACACTGGTTCGCGAATCGTC 341 555 830 Antisense
GTCGGCGTTCTTCTCAAAAGGGCAC 241 471 852 Antisense
GTTCGACGAGTGGACAGCTGCCGAC 485 441 882 Antisense
GCAGGATGTACATTCGCTTGTTCCA 617 309 972 Antisense
Sequence Source Affymetrix Proprietary Database