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[187833_s_at]

Description W09G10.4 /REP_DB=WormBase Gene ID /WP=CE24044 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O16637 protein_id:AAB66112.2
Cluster 6grp_high1_10_10 > 17      6grp_total > 05      4grp_total > 63      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 223.4
(3)
P 		125.2
(-0.9)
A 		161.4
(0.5)
A 		72.8
(-3)
A 		151
B 241
(3)
P 		89.3
(-3)
A 		141.3
(-0.9)
A 		97.1
(-2.7)
A 		152
C 211.4
(3)
A 		151
(0.4)
A 		134.7
(-0.3)
A 		74
(-3)
A 		137
avr 225.3
(3) 		121.8
(-1.3) 		145.8
(-0.3) 		81.3
(-3) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 283
1 2 3 4 5 6 range
A 200.2
(1.1)
M 		239.3
(3)
P 		117.9
(-3)
P 		143.9
(-1.7)
P 		126
(-2.6)
A 		149.3
(-1.4)
A 		121
B 170.8
(3)
A 		159.6
(2)
P 		141.4
(0.3)
P 		133
(-0.4)
A 		145.7
(0.7)
P 		105
(-3)
P 		66
C 350.9
(3)
P 		191
(-0.4)
P 		216.2
(0.1)
P 		123.6
(-1.8)
A 		166.2
(-0.9)
P 		67.6
(-3)
A 		283
avr 240.6
(3) 		196.6
(1) 		158.5
(-0.7) 		133.5
(-1.8) 		146
(-1.3) 		107.3
(-3) 		133
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 81.4
(3)
P 		27.2
(-1.6)
A 		42.2
(-0.3)
A 		10.7
(-3)
A 		71
B 76.9
(3)
P 		22.1
(-2.9)
A 		32.7
(-1.7)
A 		20.7
(-3)
A 		56
C 70
(3)
A 		43.4
(0.2)
A 		46.9
(0.6)
A 		12.5
(-3)
A 		58
avr 76.1
(3) 		30.9
(-1.4) 		40.6
(-0.5) 		14.6
(-3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 36.9
(-1.9)
M 		85.1
(3)
P 		25.7
(-3)
P 		36.5
(-1.9)
P 		38
(-1.8)
A 		36.4
(-1.9)
A 		59
B 59.4
(3)
A 		53.1
(1.5)
P 		34.3
(-3)
P 		35.2
(-2.8)
A 		59.2
(3)
P 		39.2
(-1.8)
P 		25
C 130.1
(3)
P 		58.3
(-1)
P 		55
(-1.2)
P 		24.9
(-2.9)
A 		53.8
(-1.3)
P 		22.6
(-3)
A 		108
avr 75.5
(3) 		65.5
(1.6) 		38.3
(-2.2) 		32.2
(-3) 		50.3
(-0.5) 		32.7
(-2.9) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187833_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5714
Sequence Type Exemplar sequence
Representative Public ID W09G10.4 NCBI
Target Description W09G10.4 /REP_DB=WormBase Gene ID /WP=CE24044 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O16637 protein_id:AAB66112.2
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062169(11), NM_062170(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062169 NCBI Caenorhabditis elegans AdaPtin, Delta chain (clathrin associated complex) family member (apd-3) (apd-3) mRNA, complete cds. 11/11 None
NM_062170 NCBI Caenorhabditis elegans AdaPtin, Delta chain (clathrin associated complex) family member (apd-3) (apd-3) mRNA, complete cds. 11/11 None
SNAP00000024968 ENSEMBL cdna:SNAP chromosome:CEL140:II:3531150:3546415:-1 11/11 None
GENEFINDER00000024970 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3532884:3546415:-1 11/11 None
W09G10.4a ENSEMBL cdna:known chromosome:CEL140:II:3532596:3546425:-1 gene:W09G10.4 11/11 None
W09G10.4b ENSEMBL cdna:known chromosome:CEL140:II:3532884:3544701:-1 gene:W09G10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3532882-3546414(-) 97.47 100.0
Public Domain and Genome References
Ensembl W09G10.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66112 Adaptin or adaptin-related protein protein 5, isoform a [Caenorhabditis elegans] ref|NP_494570.1| AdaPtin, Delta chain (clathrin associated complex) family member (apd-3) [Caenorhabditis elegans] 0.0
blast F88101 protein W09G10.4 [imported] - Caenorhabditis elegans 0.0
blast CAE73810 Hypothetical protein CBG21360 [Caenorhabditis briggsae] 0.0
blast AAK73904 Adaptin or adaptin-related protein protein 5, isoform b [Caenorhabditis elegans] ref|NP_494571.1| AdaPtin, Delta chain (clathrin associated complex) family member (apd-3) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002553 EMBL-EBI Adaptin, N-terminal 1.0E-126
Pfam IPR010474 EMBL-EBI Bovine leukaemia virus receptor 9.0E-11
Pfam IPR002553 EMBL-EBI Adaptin, N-terminal 3.3E-91
Pfam IPR010474 EMBL-EBI Bovine leukaemia virus receptor 9.0E-11
Pfam IPR010474 EMBL-EBI Bovine leukaemia virus receptor 2.5E-10
Pfam IPR002553 EMBL-EBI Adaptin, N-terminal 4.1E-80
Pfam IPR002553 EMBL-EBI Adaptin, N-terminal 3.7E-66
Pfam IPR002553 EMBL-EBI Adaptin, N-terminal 7.9E-25
Sequence
Target Sequence 
>C. ELEGANS:187833_S_AT
ggcggctcactgtgcatttgagagtttccaggaaggagcataaggagaaaattcgaaaaa
ttgagctgaatatggtggatacgttgaatgcgaaagtgctcaaggagtcggaggacccga
ttctgcttgccgaggagctcgattcggatgccacgtcatcagaagcttcgtttgatgtgc
aggttaccgctaccaacgtgtcacggacaatgagaggaacactgacctactttttagtgg
acgacgaaggaacacgtgacgacaagcttgatctccgtctgccaattcccgccacagtct
ttgtaatgcccaactccagcattcgaaaagacgactattcggcacttttagcctctgatg
acgtggattttggagccacacagaatgtggcaaccggagaagtgaagctgaagacggtgc
tcacacaaattgtacgaaaagctcatttttcaattgtcgaggagacgccgaaagccgctt
cgttgtttgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGGCTCACTGTGCATTTGAGAGT 393 541 3140 Antisense
AGGAGTCGGAGGACCCGATTCTGCT 44 57 3242 Antisense
TGATGTGCAGGTTACCGCTACCAAC 394 567 3312 Antisense
TACCGCTACCAACGTGTCACGGACA 185 649 3324 Antisense
GAGGAACACTGACCTACTTTTTAGT 328 403 3353 Antisense
GACGACAAGCTTGATCTCCGTCTGC 492 379 3397 Antisense
CACAGTCTTTGTAATGCCCAACTCC 556 191 3432 Antisense
GACTATTCGGCACTTTTAGCCTCTG 237 373 3472 Antisense
GAAGCTGAAGACGGTGCTCACACAA 565 343 3543 Antisense
TTGTCGAGGAGACGCCGAAAGCCGC 625 707 3593 Antisense
GCCGAAAGCCGCTTCGTTGTTTGGA 233 283 3606 Antisense
Sequence Source Affymetrix Proprietary Database