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[187832_s_at] --- /// --- /// ---

Description Y37D8A.12 /REP_DB=WormBase Gene ID /WP=CE20216 /CHR=3 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q9XWV9 protein_id:CAA21531.1
Cluster 6grp_total > 99      4grp_total > 13      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 53.8
(-0.4)
A 		17
(-3)
A 		28.5
(-2.2)
A 		101.7
(3)
A 		85
B 43.2
(0.7)
A 		57.6
(2.3)
A 		8.6
(-3)
A 		64
(3)
A 		55
C 65.2
(3)
A 		19.3
(-3)
A 		39.7
(-0.3)
A 		58.6
(2.1)
A 		46
avr 54.1
(0.5) 		31.3
(-2.3) 		25.6
(-3) 		74.8
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 40.1
(-1.6)
A 		18.4
(-3)
A 		40.5
(-1.6)
A 		78.4
(0.8)
A 		112.6
(3)
A 		105.5
(2.5)
P 		94
B 54.3
(-1)
A 		46.6
(-3)
A 		48.9
(-2.4)
A 		49.4
(-2.3)
A 		63.9
(1.5)
M 		69.7
(3)
P 		23
C 36.9
(-1.2)
A 		51.5
(0)
A 		62.7
(0.9)
A 		15.2
(-3)
A 		87.4
(3)
P 		75
(2)
P 		72
avr 43.8
(-2.4) 		38.8
(-3) 		50.7
(-1.5) 		47.7
(-1.9) 		88
(3) 		83.4
(2.4) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 19.6
(3)
A 		3.7
(-3)
A 		7.4
(-1.6)
A 		14.9
(1.2)
A 		16
B 13.8
(2.8)
A 		14.2
(3)
A 		2
(-3)
A 		13.6
(2.7)
A 		12
C 21.6
(3)
A 		5.5
(-3)
A 		13.8
(0.1)
A 		9.9
(-1.4)
A 		16
avr 18.3
(3) 		7.8
(-2.9) 		7.7
(-3) 		12.8
(-0.1) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 7.4
(-2.8)
A 		6.5
(-3)
A 		8.8
(-2.5)
A 		19.9
(-0.1)
A 		34
(3)
A 		25.7
(1.2)
P 		28
B 18.9
(-0)
A 		15.5
(-1.5)
A 		11.9
(-3)
A 		13.1
(-2.5)
A 		25.9
(3)
M 		26
(3)
P 		14
C 13.7
(-0.5)
A 		15.7
(0)
A 		15.9
(0)
A 		3.1
(-3)
A 		28.3
(3)
P 		25.1
(2.2)
P 		25
avr 13.3
(-2.6) 		12.6
(-2.8) 		12.2
(-2.9) 		12
(-3) 		29.4
(3) 		25.6
(1.7) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187832_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6593
Sequence Type Exemplar sequence
Representative Public ID Y37D8A.12 NCBI
Target Description Y37D8A.12 /REP_DB=WormBase Gene ID /WP=CE20216 /CHR=3 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q9XWV9 protein_id:CAA21531.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058747(11), NM_058748(11), NM_059086(11), NM_065584(11), NM_067277(11), NM_066970(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058747 NCBI Caenorhabditis elegans W05F2.2a (W05F2.2) mRNA, complete cds. 11/11 A 
NM_058748 NCBI Caenorhabditis elegans W05F2.2b (W05F2.2) mRNA, complete cds. 11/11 None
NM_059086 NCBI Caenorhabditis elegans W03G9.3 (W03G9.3) mRNA, complete cds. 11/11 A 
NM_065584 NCBI Caenorhabditis elegans C38D4.1a (C38D4.1) mRNA, complete cds. 11/11 A 
NM_067277 NCBI Caenorhabditis elegans Y37D8A.12a (Y37D8A.12) mRNA, complete cds. 11/11 A 
NM_066970 NCBI Caenorhabditis elegans K01G5.3 (K01G5.3) mRNA, complete cds. 11/11 None
SNAP00000029373 ENSEMBL cdna:SNAP chromosome:CEL140:I:3364028:3365858:-1 11/11 None
GENEFINDER00000029381 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3364028:3365858:-1 11/11 None
SNAP00000033390 ENSEMBL cdna:SNAP chromosome:CEL140:I:4959493:4961310:1 11/11 None
GENEFINDER00000033405 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4959493:4961310:1 11/11 None
SNAP00000028780 ENSEMBL cdna:SNAP chromosome:CEL140:III:12878531:12880334:1 11/11 None
GENEFINDER00000028814 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12878531:12880334:1 11/11 None
SNAP00000018662 ENSEMBL cdna:SNAP chromosome:CEL140:III:4783324:4785141:-1 11/11 None
GENEFINDER00000018676 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4783324:4785141:-1 11/11 None
SNAP00000033490 ENSEMBL cdna:SNAP chromosome:CEL140:III:10750365:10751581:1 11/11 None
GENEFINDER00000033497 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10750365:10751581:1 11/11 None
W05F2.2a ENSEMBL cdna:known chromosome:CEL140:I:3363821:3365858:-1 gene:W05F2.2 11/11 A 
W05F2.2b ENSEMBL cdna:known chromosome:CEL140:I:3364028:3365193:-1 gene:W05F2.2 11/11 None
W03G9.3 ENSEMBL cdna:known chromosome:CEL140:I:4959476:4961455:1 gene:W03G9.3 11/11 A 
C38D4.1a ENSEMBL cdna:known chromosome:CEL140:III:4783223:4785141:-1 gene:C38D4.1 11/11 A 
K01G5.3 ENSEMBL cdna:known chromosome:CEL140:III:10750343:10751771:1 gene:K01G5.3 11/11 None
Y37D8A.12a.1 ENSEMBL cdna:known chromosome:CEL140:III:12878264:12880557:1 gene:Y37D8A.12 11/11 A 
Y37D8A.12a.2 ENSEMBL cdna:known chromosome:CEL140:III:12878264:12880334:1 gene:Y37D8A.12 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175633 2 1 NM_065584 171751_x_at (9), 187832_s_at (11)
176705 2 1 NM_067277 187832_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4959492-4961310(+) 99.49 99.49
chrIII:12878526-12880330(+) 100.0 100.0
chrIII:10436649-10751577(+) 97.31 97.31
chrI:3364027-3365858(-) 98.69 98.69
chrIII:4783323-4785141(-) 99.06 99.06
Public Domain and Genome References
Gene Title


Ensembl W05F2.2
W03G9.3
C38D4.1
K01G5.3
Y37D8A.12
Entrez Gene 172117 Entrez gene
176505 Entrez gene
189215 Entrez gene
SwissProt O17914 EMBL-EBI
O44748 EMBL-EBI
Q9TYT9 EMBL-EBI
WormBase CE16193 Wormbase
CE14558 Wormbase
CE14614 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491148 W05F2.2a [Caenorhabditis elegans] gb|AAC78213.1| Hypothetical protein W05F2.2 [Caenorhabditis elegans] 0.0
blast NP_491487 W03G9.3 [Caenorhabditis elegans] gb|AAB96737.1| Hypothetical protein W03G9.3 [Caenorhabditis elegans] 0.0
blast CAA86323 Hypothetical protein C38D4.1a [Caenorhabditis elegans] ref|NP_497985.1| C38D4.1a [Caenorhabditis elegans] 0.0
blast CAA21531 Hypothetical protein Y37D8A.12a [Caenorhabditis elegans] ref|NP_499678.1| Y37D8A.12a [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491148.1 2 7-29,111-130
NP_491487.1 2 7-29,111-130
NP_497985.1 2 7-29,111-130
NP_499678.1 2 3-25,106-126
W05F2.2a 2 7-29,111-130
W03G9.3 2 7-29,111-130
C38D4.1a 2 7-29,111-130
Y37D8A.12a.1 2 3-25,106-126
Y37D8A.12a.2 2 3-25,106-126
SNAP00000029373 2 7-29,111-130
GENEFINDER00000029381 2 7-29,111-130
SNAP00000033390 2 7-29,111-130
GENEFINDER00000033405 2 7-29,111-130
SNAP00000028780 2 3-25,106-126
GENEFINDER00000028814 2 3-25,106-126
SNAP00000018662 2 7-29,111-130
GENEFINDER00000018676 2 7-29,111-130
Sequence
Target Sequence 
>C. ELEGANS:187832_S_AT
atcaatgatttggatctccctgcgccgctggtgacgacagaggaaaaggcgcggtacgct
ttggagctcgtgcaacatcatgtggagaaaatgaccgagcagaaggttttcctgcacgga
tatcttgatgatggaccgccgttcgtttgctcatcggagaccttggagaaggagatcttc
agcgatgcccgtcttgagctgaagcttgaattgacgtcaccggtgcacatgaagatggac
gtgttctctgtgaaattggagccacaacagaagacagtgctgccagaacccaccaaggaa
acgccgaaaaccgacgctctcctcacaccgggatctcatattaagggaagatcaatggcg
gctgaatcgtcgaagcgcaaagccccgaagctgtccactgatttgacgaacttggtccca
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAATGATTTGGATCTCCCTGCGC 151 27 769 Antisense
TGCGCCGCTGGTGACGACAGAGGAA 35 585 789 Antisense
TGGAGCTCGTGCAACATCATGTGGA 80 549 830 Antisense
AATGACCGAGCAGAAGGTTTTCCTG 444 153 858 Antisense
GGTTTTCCTGCACGGATATCTTGAT 148 507 873 Antisense
TTGAGCTGAAGCTTGAATTGACGTC 316 703 962 Antisense
CCGGTGCACATGAAGATGGACGTGT 271 265 988 Antisense
AATTGGAGCCACAACAGAAGACAGT 112 179 1022 Antisense
GAAGATCAATGGCGGCTGAATCGTC 710 337 1115 Antisense
CTGAATCGTCGAAGCGCAAAGCCCC 430 227 1130 Antisense
ACTGATTTGACGAACTTGGTCCCAC 217 97 1165 Antisense
Sequence Source Affymetrix Proprietary Database