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[187831_at]

Description C34F11.7 /REP_DB=WormBase Gene ID /WP=CE04167 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q18460 protein_id:AAA85758.1
Cluster 6grp_total > 74      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 33.5
(-1.5)
A 		27.9
(-3)
A 		35.9
(-0.8)
A 		49.9
(3)
A 		22
B 12.3
(-1.9)
A 		45.4
(3)
P 		19.2
(-0.9)
A 		4.6
(-3)
A 		41
C 35.7
(2.9)
A 		3.4
(-3)
A 		34.8
(2.7)
P 		36.4
(3)
A 		33
avr 27.2
(-1) 		25.6
(-3) 		30
(2.6) 		30.3
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 34
(1.9)
A 		3.9
(-3)
A 		35.5
(2.2)
A 		40.6
(3)
A 		30.5
(1.3)
A 		30.8
(1.4)
M 		37
B 27.6
(1.3)
A 		24.9
(0.5)
P 		23.5
(0)
A 		13.5
(-3)
A 		21.5
(-0.6)
A 		33.2
(3)
P 		20
C 18.1
(-2.9)
A 		17.5
(-3)
A 		56.3
(3)
A 		53.2
(2.5)
P 		35.8
(-0.2)
P 		44.4
(1.2)
P 		39
avr 26.6
(-0.1) 		15.4
(-3) 		38.4
(3) 		35.8
(2.3) 		29.3
(0.6) 		36.1
(2.4) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 12.2
(3)
A 		6.1
(-3)
A 		9.4
(0.2)
A 		7.3
(-1.8)
A 		6
B 3.9
(-1.3)
A 		11.2
(3)
P 		4.4
(-1)
A 		1
(-3)
A 		10
C 11.8
(2.8)
A 		1
(-3)
A 		12.1
(3)
P 		6.1
(-0.2)
A 		11
avr 9.3
(3) 		6.1
(-1.3) 		8.6
(2.1) 		4.8
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 6.3
(0.3)
A 		1.4
(-3)
A 		7.7
(1.2)
A 		10.3
(3)
A 		9.2
(2.3)
A 		7.5
(1.1)
M 		9
B 9.6
(1.1)
A 		8.3
(0.2)
P 		5.7
(-1.6)
A 		3.6
(-3)
A 		8.7
(0.5)
A 		12.4
(3)
P 		9
C 6.7
(-2.2)
A 		5.4
(-3)
A 		14.3
(2.6)
A 		10.7
(0.3)
P 		11.6
(0.9)
P 		14.9
(3)
P 		10
avr 7.5
(-0.7) 		5
(-3) 		9.2
(0.8) 		8.2
(-0.1) 		9.8
(1.4) 		11.6
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187831_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4355
Sequence Type Exemplar sequence
Representative Public ID C34F11.7 NCBI
Target Description C34F11.7 /REP_DB=WormBase Gene ID /WP=CE04167 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q18460 protein_id:AAA85758.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C34F11.7
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C34F11.7 C34F11.7 /REP_DB=WormBase Gene ID /WP=CE04167 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q18460 protein_id:AAA85758.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_170988 6/11 Cross Hyb Matching Probes B 
GENEFINDER00000021342 6/11 Cross Hyb Matching Probes None
C27D6.4b.1 6/11 Cross Hyb Matching Probes None
C27D6.4b.2 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5187162-5187532(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:187831_AT
gacgactgggcgacgagtggagttctcgaaaaagatgtatttatttcatctgttcatgat
gagaaggacactcttgatatattaaagctcttcgacaatgatatcgatggattctccgac
gacaatttccgaattaaaatggaaccgaacgatgaaacttctggtaagacctctttcttt
aaatatgccctttccaaacattcaaagaattttcttctgatttatggtcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGACTGGGCGACGAGTGGAGTTC 419 379 19 Antisense
GATGTATTTATTTCATCTGTTCATG 35 411 52 Antisense
GGACACTCTTGATATATTAAAGCTC 91 527 84 Antisense
ATTAAAGCTCTTCGACAATGATATC 640 11 99 Antisense
ATATCGATGGATTCTCCGACGACAA 290 21 119 Antisense
GATTCTCCGACGACAATTTCCGAAT 312 431 128 Antisense
GGAACCGAACGATGAAACTTCTGGT 503 527 159 Antisense
GAAACTTCTGGTAAGACCTCTTTCT 539 355 172 Antisense
GACCTCTTTCTTTAAATATGCCCTT 602 381 186 Antisense
AATATGCCCTTTCCAAACATTCAAA 530 173 200 Antisense
GAATTTTCTTCTGATTTATGGTCAC 414 325 225 Antisense
Sequence Source Affymetrix Proprietary Database