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[187830_s_at]

Description C43E11.6 /REP_DB=WormBase Gene ID /WP=CE08684 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:P91146 protein_id:AAB37620.1
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 26      4grp_high_8_8 > 27      6grp_highest_nonorm > 61      6grp_total > 26      4grp_total > 29      6grp_highest_sub > 01_02      6grp_cgc > 14      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 265
1 2 3 4 range
A 561
(3)
P 		474.7
(-0.1)
P 		394.9
(-3)
P 		546.5
(2.5)
P 		166
B 535.3
(1.3)
P 		509
(0.6)
P 		364.4
(-3)
P 		604.7
(3)
M 		240
C 629.2
(3)
P 		580.4
(1.3)
P 		456.4
(-3)
P 		496.2
(-1.6)
P 		173
avr 575.2
(3) 		521.4
(1.1) 		405.2
(-3) 		549.1
(2.1) 		170

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 278
1 2 3 4 5 6 range
A 542.9
(2.1)
P 		583.1
(3)
P 		330.6
(-2.9)
P 		328
(-3)
P 		359.4
(-2.3)
P 		428.5
(-0.6)
P 		255
B 472.6
(2.8)
P 		476.8
(3)
P 		420.5
(0)
P 		419.2
(-0.1)
P 		363.5
(-3)
P 		379.7
(-2.1)
P 		113
C 605.6
(3)
P 		576.2
(2.3)
P 		443.4
(-0.7)
P 		340.1
(-3)
P 		385
(-2)
P 		442.1
(-0.7)
P 		266
avr 540.4
(2.8) 		545.4
(3) 		398.2
(-1.8) 		362.4
(-3) 		369.3
(-2.8) 		416.8
(-1.2) 		183
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 204.3
(3)
P 		103
(-1.9)
P 		103.2
(-1.9)
P 		80
(-3)
P 		124
B 170.7
(3)
P 		125.7
(-0.1)
P 		84.5
(-3)
P 		128.9
(0.1)
M 		86
C 208.3
(3)
P 		166.9
(1)
P 		159.1
(0.6)
P 		83.7
(-3)
P 		125
avr 194.4
(3) 		131.9
(-0.9) 		115.6
(-1.9) 		97.5
(-3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 100.1
(-1.8)
P 		207.4
(3)
P 		72
(-3)
P 		83.2
(-2.5)
P 		108.5
(-1.4)
P 		104.3
(-1.6)
P 		135
B 164.4
(3)
P 		158.7
(2.5)
P 		102.1
(-3)
P 		111
(-2.1)
P 		147.7
(1.4)
P 		141.6
(0.8)
P 		62
C 224.5
(3)
P 		175.8
(1.1)
P 		112.9
(-1.3)
P 		68.4
(-3)
P 		124.6
(-0.8)
P 		148
(0.1)
P 		156
avr 163
(1.9) 		180.6
(3) 		95.7
(-2.5) 		87.5
(-3) 		126.9
(-0.5) 		131.3
(-0.2) 		93
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187830_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1689
Sequence Type Exemplar sequence
Representative Public ID C43E11.6 NCBI
Target Description C43E11.6 /REP_DB=WormBase Gene ID /WP=CE08684 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:P91146 protein_id:AAB37620.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171836(11), NM_058931(11), NM_058932(11), NM_001025870(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171836 NCBI Caenorhabditis elegans NeurABin family member (nab-1) (nab-1) mRNA, complete cds. 11/11 None
NM_058931 NCBI Caenorhabditis elegans NeurABin family member (nab-1) (nab-1) mRNA, complete cds. 11/11 None
NM_058932 NCBI Caenorhabditis elegans NeurABin family member (nab-1) (nab-1) mRNA, complete cds. 11/11 None
NM_001025870 NCBI Caenorhabditis elegans NeurABin family member (nab-1) (nab-1) mRNA, complete cds. 11/11 None
SNAP00000031009 ENSEMBL cdna:SNAP chromosome:CEL140:I:4229916:4235661:1 11/11 None
GENEFINDER00000031022 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4229916:4236279:1 11/11 None
C43E11.6d.2 ENSEMBL cdna:known chromosome:CEL140:I:4229576:4236033:1 gene:C43E11.6 11/11 None
C43E11.6d.1 ENSEMBL cdna:known chromosome:CEL140:I:4229576:4236034:1 gene:C43E11.6 11/11 None
C43E11.6d.3 ENSEMBL cdna:known chromosome:CEL140:I:4229578:4235661:1 gene:C43E11.6 11/11 None
C43E11.6a ENSEMBL cdna:known chromosome:CEL140:I:4229889:4235661:1 gene:C43E11.6 11/11 None
C43E11.6b ENSEMBL cdna:known chromosome:CEL140:I:4229916:4235661:1 gene:C43E11.6 11/11 None
C43E11.6e ENSEMBL cdna:known chromosome:CEL140:I:4231144:4235661:1 gene:C43E11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172021 5 4 NM_001025870 187830_s_at (11)
NM_058931 187830_s_at (11)
NM_058932 187830_s_at (11)
NM_171836 187830_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4229915-4235661(+) 100.0 100.0
Public Domain and Genome References
Ensembl C43E11.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL16317 Neurabin protein 1, isoform d [Caenorhabditis elegans] ref|NP_740837.1| NeurABin family member (nab-1) [Caenorhabditis elegans] 0.0
blast AAB37620 Neurabin protein 1, isoform a [Caenorhabditis elegans] ref|NP_491332.1| NeurABin family member (nab-1) [Caenorhabditis elegans] 0.0
blast AAV58881 Neurabin protein 1, isoform e [Caenorhabditis elegans] ref|NP_001021041.1| NeurABin family member (nab-1) [Caenorhabditis elegans] 0.0
blast AAK68243 Neurabin protein 1, isoform b [Caenorhabditis elegans] ref|NP_491333.1| NeurABin family member (nab-1) [Caenorhabditis elegans] 0.0
blast CAE66749 Hypothetical protein CBG12099 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 2.0E-17
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 6.6E-15
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 2.0E-17
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 6.6E-15
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 2.0E-17
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 6.6E-15
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 2.0E-17
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 6.6E-15
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 2.0E-17
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 6.6E-15
Sequence
Target Sequence 
>C. ELEGANS:187830_S_AT
tagaccaggtggagagcttcctcacgaggataaggctgttatggttaatttggagactat
tactccatcaaccaaaaaagatgcggaagtatcagttggaagtagttggacagaagagta
ctcatcaccatgcgagtcgccagtccctcgtatctccgagccagcatctccggctcttcc
acataaattgacgcatcgcaaacttctgttcccactccgaaagaagtacgccgaaaacga
gttctggcgtgccacgtgtcaaccagttggtcttcaagctcttcattggacggtggacga
tgtttgtcagttgctcgtttcaatgggcttggacaaatatgtgccagagttcaccattaa
taagatcgatggagccaagttcctcgagctcgacggaaataaactgaaggcaatgggaat
tcaaaatcactcggatcgttctctaattaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGACCAGGTGGAGAGCTTCCTCAC 709 651 1629 Antisense
AGAGTACTCATCACCATGCGAGTCG 407 67 1743 Antisense
TCTCCGGCTCTTCCACATAAATTGA 32 611 1795 Antisense
ATTGACGCATCGCAAACTTCTGTTC 554 5 1815 Antisense
ACTTCTGTTCCCACTCCGAAAGAAG 341 97 1830 Antisense
AAACGAGTTCTGGCGTGCCACGTGT 612 109 1863 Antisense
AACCAGTTGGTCTTCAAGCTCTTCA 101 147 1889 Antisense
AAGCTCTTCATTGGACGGTGGACGA 500 149 1904 Antisense
GTCAGTTGCTCGTTTCAATGGGCTT 684 465 1934 Antisense
CGATGGAGCCAAGTTCCTCGAGCTC 17 251 1995 Antisense
CACTCGGATCGTTCTCTAATTAAAA 63 199 2056 Antisense
Sequence Source Affymetrix Proprietary Database