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[187829_s_at]

Description F55C12.3 /REP_DB=WormBase Gene ID /WP=CE02772 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q20809 protein_id:AAC71163.1
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 72      6grp_total > 93      4grp_total > 06      6grp_cgc > 89      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 369.2
(2.4)
P 		244.7
(-2.3)
P 		226.7
(-3)
P 		384
(3)
P 		157
B 351.8
(1.5)
P 		195.2
(-3)
P 		265.2
(-1)
P 		403.8
(3)
P 		209
C 299.4
(-0.6)
P 		241.6
(-3)
P 		245.3
(-2.8)
P 		388.2
(3)
P 		147
avr 340.1
(1.1) 		227.2
(-3) 		245.7
(-2.3) 		392
(3) 		165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 299
1 2 3 4 5 6 range
A 331.9
(-1)
P 		284.2
(-2.2)
P 		488.4
(3)
P 		334.7
(-0.9)
P 		464.3
(2.4)
P 		250.9
(-3)
P 		238
B 415.8
(-0.9)
P 		491.1
(2.5)
P 		503.2
(3)
P 		368.3
(-3)
P 		471.4
(1.6)
P 		457.5
(1)
P 		135
C 354.4
(-0.1)
P 		374.3
(0.3)
P 		212.2
(-3)
P 		386.4
(0.5)
P 		480.9
(2.4)
P 		511
(3)
P 		299
avr 367.4
(-2.8) 		383.2
(-1.9) 		401.3
(-0.9) 		363.1
(-3) 		472.2
(3) 		406.5
(-0.6) 		109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 134.4
(3)
P 		53.1
(-3)
P 		59.3
(-2.5)
P 		56.2
(-2.8)
P 		81
B 112.2
(3)
P 		48.2
(-3)
P 		61.5
(-1.8)
P 		86
(0.5)
P 		64
C 99.1
(3)
P 		69.5
(-2.3)
P 		85.5
(0.6)
P 		65.5
(-3)
P 		34
avr 115.2
(3) 		56.9
(-3) 		68.8
(-1.8) 		69.2
(-1.7) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 61.2
(-3)
P 		101.1
(0)
P 		106.4
(0.4)
P 		84.9
(-1.2)
P 		140.1
(3)
P 		61.1
(-3)
P 		79
B 144.7
(0)
P 		163.5
(1.2)
P 		122.2
(-1.4)
P 		97.6
(-3)
P 		191.5
(3)
P 		170.6
(1.7)
P 		94
C 131.3
(1)
P 		114.2
(0.1)
P 		54
(-3)
P 		77.7
(-1.8)
P 		155.6
(2.2)
P 		171.1
(3)
P 		117
avr 112.4
(-1) 		126.3
(0.1) 		94.2
(-2.4) 		86.7
(-3) 		162.4
(3) 		134.3
(0.8) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187829_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5735
Sequence Type Exemplar sequence
Representative Public ID F55C12.3 NCBI
Target Description F55C12.3 /REP_DB=WormBase Gene ID /WP=CE02772 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q20809 protein_id:AAC71163.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062769(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062769 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-234) (tag-234) mRNA, complete cds. 11/11 None
F55C12.7.1 ENSEMBL cdna:known chromosome:CEL140:II:5864159:5866933:1 gene:F55C12.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000011037 8/11 Cross Hyb Matching Probes None
F55C12.7.2 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5866105-5866987(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-234
Ensembl F55C12.7
Entrez Gene 173996 Entrez gene
SwissProt Q95ZS9 EMBL-EBI
WormBase CE28455 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK73880 Temporarily assigned gene name protein 234 [Caenorhabditis elegans] ref|NP_495170.1| Temporarily Assigned Gene name family member (tag-234) [Caenorhabditis elegans] 2.0E-53
blast CAE59212 Hypothetical protein CBG02525 [Caenorhabditis briggsae] 2.0E-14
blast CAE59213 Hypothetical protein CBG02526 [Caenorhabditis briggsae] 5.0E-14
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495170.1 1 7-29
F55C12.7.1 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:187829_S_AT
gaatcgaagaaactgctccaggtgttcatatttcaaatattgtaaaaacgagttgtccgt
ctgattttttctgtttcaaacaatcgaaaattgataagaaatccaaacactacgagtatt
catatgattgtggaacaattcaaatatgctcgcaaccaacatgtgtcaacgaagacgacg
gctttcgtacgtgttgctgtacaaccgatttctgtaattcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCGAAGAAACTGCTCCAGGTGT 421 329 95 Antisense
ACTGCTCCAGGTGTTCATATTTCAA 176 99 106 Antisense
GTAAAAACGAGTTGTCCGTCTGATT 323 461 136 Antisense
TTGTCCGTCTGATTTTTTCTGTTTC 57 707 147 Antisense
GAAATCCAAACACTACGAGTATTCA 658 361 192 Antisense
GGAACAATTCAAATATGCTCGCAAC 179 529 226 Antisense
TGCTCGCAACCAACATGTGTCAACG 413 581 241 Antisense
TGTGTCAACGAAGACGACGGCTTTC 658 501 256 Antisense
AGACGACGGCTTTCGTACGTGTTGC 429 69 267 Antisense
GTACGTGTTGCTGTACAACCGATTT 314 459 281 Antisense
GTACAACCGATTTCTGTAATTCTTC 168 461 293 Antisense
Sequence Source Affymetrix Proprietary Database