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[187827_s_at]

Description F46F11.9 /REP_DB=WormBase Gene ID /WP=CE10612 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:P91304 protein_id:AAB42270.1
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 07      4grp_high_8_8 > 40      6grp_highest_nonorm > 60      6grp_total > 04      4grp_total > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 293
1 2 3 4 range
A 544.3
(3)
P 		310.8
(-2)
P 		377.6
(-0.6)
P 		266.4
(-3)
P 		278
B 530.9
(3)
P 		326.6
(-2.1)
M 		292.2
(-3)
P 		306.5
(-2.6)
P 		239
C 540.9
(3)
P 		300
(-2)
P 		388.2
(-0.2)
P 		251
(-3)
P 		290
avr 538.7
(3) 		312.5
(-2.1) 		352.7
(-1.2) 		274.6
(-3) 		264

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 315
1 2 3 4 5 6 range
A 551.1
(3)
P 		544.8
(2.9)
P 		269
(-3)
P 		383.8
(-0.6)
P 		392.5
(-0.4)
P 		318.3
(-2)
P 		282
B 507.3
(3)
P 		343.8
(-0.6)
P 		345.3
(-0.6)
P 		422.9
(1.1)
P 		248.4
(-2.7)
P 		235.9
(-3)
P 		271
C 547.3
(3)
P 		398.8
(-0)
P 		460.1
(1.2)
P 		390.9
(-0.2)
P 		353.1
(-1)
P 		252.5
(-3)
P 		295
avr 535.2
(3) 		429.1
(0.6) 		358.1
(-1) 		399.2
(-0.1) 		331.3
(-1.6) 		268.9
(-3) 		266
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 198.2
(3)
P 		67.5
(-1.9)
P 		98.7
(-0.8)
P 		39
(-3)
P 		159
B 169.3
(3)
P 		80.7
(-2.1)
M 		67.7
(-2.9)
P 		65.3
(-3)
P 		104
C 179
(3)
P 		86.3
(-1.1)
P 		135.3
(1.1)
P 		42.3
(-3)
P 		137
avr 182.2
(3) 		78.2
(-1.7) 		100.6
(-0.7) 		48.9
(-3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 101.6
(-1.1)
P 		193.8
(3)
P 		58.6
(-3)
P 		97.3
(-1.3)
P 		118.5
(-0.3)
P 		77.5
(-2.2)
P 		135
B 176.5
(3)
P 		114.4
(-1)
P 		83.9
(-3)
P 		112
(-1.2)
P 		100.9
(-1.9)
P 		88
(-2.7)
P 		93
C 202.9
(3)
P 		121.7
(-0.9)
P 		117.1
(-1.1)
P 		78.6
(-3)
P 		114.2
(-1.3)
P 		84.5
(-2.7)
P 		124
avr 160.3
(3) 		143.3
(1.7) 		86.5
(-2.8) 		96
(-2) 		111.2
(-0.8) 		83.3
(-3) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187827_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2445
Sequence Type Exemplar sequence
Representative Public ID F46F11.9 NCBI
Target Description F46F11.9 /REP_DB=WormBase Gene ID /WP=CE10612 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:P91304 protein_id:AAB42270.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059241(11), NM_059242(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059241 NCBI Caenorhabditis elegans F46F11.9b (F46F11.9) mRNA, complete cds. 11/11 None
NM_059242 NCBI Caenorhabditis elegans F46F11.9a (F46F11.9) mRNA, complete cds. 11/11 None
GENEFINDER00000023463 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5609591:5616383:-1 9/11 None
SNAP00000023447 ENSEMBL cdna:SNAP chromosome:CEL140:I:5610611:5616383:-1 11/11 None
F46F11.9b ENSEMBL cdna:known chromosome:CEL140:I:5610397:5616405:-1 gene:F46F11.9 11/11 None
F46F11.9a ENSEMBL cdna:known chromosome:CEL140:I:5610611:5616383:-1 gene:F46F11.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5610610-5615917(-) 100.0 100.0
Public Domain and Genome References
Ensembl F46F11.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM15575 Hypothetical protein F46F11.9b [Caenorhabditis elegans] ref|NP_491642.2| F46F11.9b [Caenorhabditis elegans] 0.0
blast AAM15574 Hypothetical protein F46F11.9a [Caenorhabditis elegans] ref|NP_491643.2| F46F11.9a [Caenorhabditis elegans] 0.0
blast CAE68923 Hypothetical protein CBG14902 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 1.39999997615814
Pfam IPR005124 EMBL-EBI Vacuolar (H+)-ATPase G subunit 1.3E-56
Sequence
Target Sequence 
>C. ELEGANS:187827_S_AT
gtgacacctccgaaatggccatgtcctgcagagattcattcgacaatggatgatgaattt
gcatcaaaaatcgcagagaaaattggaattttatggaaagcaaatattgtcaacaatgag
ggattggtaacatcatttattggcgaatcatttatcgatgatccatttgtaaaacttaaa
actttgaaaaaggatgattcagtattatcttcactccggatctcatgtgaaacaaccgcc
aaagaaatttcccacaatttctcagcttctcatatttgcgaactcccaattactcttcta
attcaaaacaaagatcttcaacgccgcccggtctcggtgtcgataaaattgtcttcaaaa
gtacgtgaacctgtcgacggaattcatttggtggctcccgagaatcgtcaccaaatgtgg
attgatcgtccagttcgaaaacaaactatcggtattgatgatgaggcaaaacttgaaatg
aaatggaaaataactcatgctgctgtatatgatgttggaggagctaatttaagtattgaa
gcaatatttgaaggaagtaatgatgctgttatttttaaggttccgagtgtgctatcggtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGACACCTCCGAAATGGCCATGTC 77 481 2818 Antisense
GGCCATGTCCTGCAGAGATTCATTC 680 543 2834 Antisense
TCAGTATTATCTTCACTCCGGATCT 24 625 3016 Antisense
GGATCTCATGTGAAACAACCGCCAA 252 511 3035 Antisense
AGCTTCTCATATTTGCGAACTCCCA 251 79 3081 Antisense
GAACTCCCAATTACTCTTCTAATTC 293 349 3097 Antisense
CAAAACAAAGATCTTCAACGCCGCC 546 189 3121 Antisense
CGCCCGGTCTCGGTGTCGATAAAAT 252 255 3142 Antisense
GTCGACGGAATTCATTTGGTGGCTC 14 473 3190 Antisense
TTGGTGGCTCCCGAGAATCGTCACC 535 707 3205 Antisense
TAAGGTTCCGAGTGTGCTATCGGTC 363 545 3393 Antisense
Sequence Source Affymetrix Proprietary Database