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[187826_at]

Description R02E12.3 /REP_DB=WormBase Gene ID /WP=CE04780 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q21643 protein_id:AAA96186.1
Cluster 6grp_total > 93      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 71
(-1.8)
A 		83.2
(-1.2)
A 		46.7
(-3)
A 		167.4
(3)
P 		121
B 69.4
(-3)
A 		85.7
(2.2)
A 		77.5
(-0.4)
M 		88.1
(3)
M 		19
C 86.7
(-0.4)
P 		101.7
(0.5)
P 		43.1
(-3)
A 		144.6
(3)
M 		102
avr 75.7
(-1.5) 		90.2
(-0.3) 		55.8
(-3) 		133.4
(3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 77.2
(3)
A 		59.8
(-1)
M 		51.2
(-3)
M 		51.6
(-2.9)
A 		71.9
(1.8)
A 		61.7
(-0.6)
A 		26
B 60
(3)
A 		46.5
(-3)
A 		58.1
(2.2)
A 		47
(-2.8)
A 		58.8
(2.5)
M 		51
(-1)
P 		14
C 39.7
(-3)
A 		64.3
(1.3)
A 		71.8
(2.6)
A 		74.4
(3)
A 		68.2
(1.9)
A 		56.3
(-0.1)
P 		35
avr 59
(-1.4) 		56.9
(-2.6) 		60.4
(-0.5) 		57.7
(-2.2) 		66.3
(3) 		56.3
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 25.9
(3)
A 		18.1
(-0.4)
A 		12.2
(-3)
A 		24.5
(2.4)
P 		14
B 22.1
(3)
A 		21.2
(1.7)
A 		18
(-3)
M 		18.8
(-1.8)
M 		4
C 28.7
(2.7)
P 		29.3
(3)
P 		15
(-3)
A 		24.4
(0.9)
M 		14
avr 25.6
(3) 		22.9
(1.5) 		15.1
(-3) 		22.6
(1.3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 14.2
(-1.3)
A 		21.3
(2.8)
M 		11.2
(-3)
M 		13.1
(-1.9)
A 		21.7
(3)
A 		15
(-0.8)
A 		11
B 20.9
(1.4)
A 		15.5
(-1.4)
A 		14.1
(-2.2)
A 		12.5
(-3)
A 		23.9
(3)
M 		19
(0.4)
P 		11
C 14.7
(-3)
A 		19.6
(1)
A 		18.3
(-0.1)
A 		15
(-2.8)
A 		22.1
(3)
A 		18.9
(0.4)
P 		7
avr 16.6
(-1) 		18.8
(0.5) 		14.5
(-2.3) 		13.5
(-3) 		22.6
(3) 		17.6
(-0.3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187826_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18527
Sequence Type Exemplar sequence
Representative Public ID R02E12.3 NCBI
Target Description R02E12.3 /REP_DB=WormBase Gene ID /WP=CE04780 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q21643 protein_id:AAA96186.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029648(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029648 NCBI Caenorhabditis elegans R02E12.2a (R02E12.2) mRNA, complete cds. 11/11 None
SNAP00000023242 ENSEMBL cdna:SNAP chromosome:CEL140:X:4012207:4013555:1 11/11 None
GENEFINDER00000023246 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4012207:4012992:1 11/11 None
R02E12.2a ENSEMBL cdna:known chromosome:CEL140:X:4012207:4022185:1 gene:R02E12.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180685 2 1 NM_001029648 187826_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4012207-4012993(+) 100.0 100.0
Public Domain and Genome References
Ensembl R02E12.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96186 Hypothetical protein R02E12.2a [Caenorhabditis elegans] ref|NP_001024819.1| R02E12.2a [Caenorhabditis elegans] 0.0
blast AAP40522 Hypothetical protein R02E12.2b [Caenorhabditis elegans] ref|NP_001024820.1| R02E12.2b [Caenorhabditis elegans] 0.0
blast CAE68514 Hypothetical protein CBG14328 [Caenorhabditis briggsae] 0.0
blast AAA96186 Hypothetical protein R02E12.2a [Caenorhabditis elegans] ref|NP_001024819.1| R02E12.2a [Caenorhabditis elegans] 1.0E-135
blast AAA96186 Hypothetical protein R02E12.2a [Caenorhabditis elegans] ref|NP_001024819.1| R02E12.2a [Caenorhabditis elegans] 1.0E-134
blast CAE68514 Hypothetical protein CBG14328 [Caenorhabditis briggsae] 6.0E-12
blast CAE68514 Hypothetical protein CBG14328 [Caenorhabditis briggsae] 4.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR004892 EMBL-EBI Mo25 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:187826_AT
caaagtttgggacacatctcgcatgcatccgcacaagctgtcttcatcgtactgtaaatg
ctagcaactactctacaatgagcgatggtggtctgtacactagcgacgagccgtgcagct
cggcccaggctgaattccgacttgctgctcactgggagagcacgtttacccgtactcgtg
aaatccattgcgacactggatactcgtcgcaaagcccacctgaaacaaccgttttcattc
aaaaatctcgctttccggtagctgaaaagcctggcaccccggagttgaaaagtttcgagt
cgaagaaacttgtgcaaaagaagtcaggcaacgcatctaccccaaccagaaaattggcaa
gtgaagaaaagaaagctaagaatacaagcatgggtcaaacgccatccaaactcaaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAGTTTGGGACACATCTCGCATG 234 193 176 Antisense
CACAAGCTGTCTTCATCGTACTGTA 137 195 207 Antisense
GAGCGATGGTGGTCTGTACACTAGC 299 387 255 Antisense
TGTACACTAGCGACGAGCCGTGCAG 342 559 269 Antisense
CCGACTTGCTGCTCACTGGGAGAGC 700 261 312 Antisense
CTGGGAGAGCACGTTTACCCGTACT 179 239 327 Antisense
TACCCGTACTCGTGAAATCCATTGC 224 649 342 Antisense
GACACTGGATACTCGTCGCAAAGCC 346 367 367 Antisense
AAAATCTCGCTTTCCGGTAGCTGAA 419 133 417 Antisense
AAGAAGTCAGGCAACGCATCTACCC 562 151 493 Antisense
GTCAAACGCCATCCAAACTCAAATC 279 463 569 Antisense
Sequence Source Affymetrix Proprietary Database