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[187825_s_at]

Description C17C3.1 /REP_DB=WormBase Gene ID /WP=CE04021 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q18062 protein_id:AAB52685.1
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 76      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 99      6grp_total > 66      4grp_total > 09      6grp_highest_sub > Da      6grp_high1_sub > Da      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6658
1 2 3 4 range
A 322.8
(-3)
P 		905.8
(-2.5)
P 		987.2
(-2.4)
P 		6980.4
(3)
P 		6658
B 349.4
(-3)
P 		846.2
(-2.5)
P 		1166.2
(-2.2)
P 		6435.6
(3)
P 		6086
C 366.7
(-3)
P 		838.7
(-2.5)
P 		1118.8
(-2.3)
P 		6621.8
(3)
P 		6255
avr 346.3
(-3) 		863.6
(-2.5) 		1090.7
(-2.3) 		6679.3
(3) 		6333

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2502
1 2 3 4 5 6 range
A 690.7
(-3)
P 		753.8
(-2.8)
P 		1358.7
(-1.1)
P 		1010.5
(-2.1)
P 		824.9
(-2.6)
P 		2815.5
(3)
P 		2125
B 737.8
(-3)
P 		961.9
(-2.4)
P 		1151.5
(-1.9)
P 		917.7
(-2.5)
P 		733.1
(-3)
P 		2982
(3)
P 		2249
C 615.4
(-2.8)
P 		770.8
(-2.5)
P 		1079.2
(-1.7)
P 		1099.6
(-1.7)
P 		542.7
(-3)
P 		3044.5
(3)
P 		2502
avr 681.3
(-3) 		828.8
(-2.6) 		1196.5
(-1.6) 		1009.3
(-2.1) 		700.2
(-2.9) 		2947.3
(3) 		2266
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1260
1 2 3 4 range
A 117.5
(-3)
P 		196.6
(-2.5)
P 		258.1
(-2.1)
P 		1021.8
(3)
P 		904
B 111.4
(-3)
P 		209
(-2.5)
P 		270.2
(-2.2)
P 		1371.4
(3)
P 		1260
C 121.4
(-3)
P 		241.1
(-2.3)
P 		389.9
(-1.4)
P 		1116.5
(3)
P 		995
avr 116.8
(-3) 		215.6
(-2.4) 		306.1
(-1.9) 		1169.9
(3) 		1053

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 985
1 2 3 4 5 6 range
A 127.3
(-3)
P 		268.1
(-1.5)
P 		295.9
(-1.2)
P 		256.3
(-1.6)
P 		248.9
(-1.7)
P 		685.5
(3)
P 		558
B 256.7
(-2.9)
P 		320.2
(-2.5)
P 		279.6
(-2.7)
P 		243.1
(-3)
P 		297.8
(-2.6)
P 		1112
(3)
P 		869
C 228.1
(-2.6)
P 		235.2
(-2.6)
P 		274.7
(-2.3)
P 		221.1
(-2.7)
P 		175.6
(-3)
P 		1019.2
(3)
P 		844
avr 204
(-3) 		274.5
(-2.4) 		283.4
(-2.4) 		240.2
(-2.7) 		240.8
(-2.7) 		938.9
(3) 		735
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187825_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4507
Sequence Type Exemplar sequence
Representative Public ID C17C3.1 NCBI
Target Description C17C3.1 /REP_DB=WormBase Gene ID /WP=CE04021 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q18062 protein_id:AAB52685.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062674(11), NM_062678(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062674 NCBI Caenorhabditis elegans C17C3.1a (C17C3.1) mRNA, complete cds. 11/11 A 
NM_062678 NCBI Caenorhabditis elegans C17C3.1b (C17C3.1) mRNA, complete cds. 11/11 A 
SNAP00000005298 ENSEMBL cdna:SNAP chromosome:CEL140:II:5572675:5574617:1 11/11 None
GENEFINDER00000005308 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5572387:5574546:1 11/11 None
C17C3.1a ENSEMBL cdna:known chromosome:CEL140:II:5570855:5574913:1 gene:C17C3.1 11/11 A 
C17C3.1b ENSEMBL cdna:known chromosome:CEL140:II:5572299:5574617:1 gene:C17C3.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173942 4 2 NM_062674 173151_s_at (11), 187825_s_at (11)
NM_062678 173151_s_at (11), 187825_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5571269-5574615(+) 100.0 100.0
Public Domain and Genome References
Ensembl C17C3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31428 Hypothetical protein C17C3.1a [Caenorhabditis elegans] ref|NP_495075.1| C17C3.1a [Caenorhabditis elegans] 0.0
blast AAK31429 Hypothetical protein C17C3.1b [Caenorhabditis elegans] ref|NP_495079.1| C17C3.1b [Caenorhabditis elegans] 0.0
blast T15540 hypothetical protein C17C3.1 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003703 EMBL-EBI Acyl-CoA thioesterase 3.7E-14
Pfam IPR003703 EMBL-EBI Acyl-CoA thioesterase 3.1E-16
Pfam IPR003703 EMBL-EBI Acyl-CoA thioesterase 3.7E-14
Pfam IPR003703 EMBL-EBI Acyl-CoA thioesterase 1.5E-10
Pfam IPR003703 EMBL-EBI Acyl-CoA thioesterase 3.7E-14
Pfam IPR003703 EMBL-EBI Acyl-CoA thioesterase 3.1E-16
Pfam IPR003703 EMBL-EBI Acyl-CoA thioesterase 3.1E-16
Sequence
Target Sequence 
>C. ELEGANS:187825_S_AT
ttcgttcttcaatgctcatttcacgtggaagagaagagctcaatcatccatcaatcagaa
atgccaaaagtaccggagccagaagttctgatgagcatgcgagacgcagttccatacatg
aaggaacttgttgaaaagggagaagtgactccaccaccagcaatgcttgcgagacttcaa
tcatacgattcaaaagtttattctgatgatcaagatctttttgaaatgagatgcacgaat
ttgggtaattattatggatttgccagtgataagaaaccggaactttatttttggatgaga
gcacgaggcgatttgagcaatgatgaacgattccacagatggctgatcgcttacaacagt
gattcacttcttgtctcaacagctgtgagcccacattataccactggcttctgctcttcg
atgctcttctcgcttgatcattgtgtat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGTTCTTCAATGCTCATTTCACG 573 693 781 Antisense
AAAGTACCGGAGCCAGAAGTTCTGA 521 121 847 Antisense
ATGCGAGACGCAGTTCCATACATGA 99 43 877 Antisense
AAGGGAGAAGTGACTCCACCACCAG 158 159 916 Antisense
TCCACCACCAGCAATGCTTGCGAGA 473 589 930 Antisense
GCTTGCGAGACTTCAATCATACGAT 352 307 945 Antisense
GGCTGATCGCTTACAACAGTGATTC 70 541 1121 Antisense
AACAGTGATTCACTTCTTGTCTCAA 313 137 1135 Antisense
GTCTCAACAGCTGTGAGCCCACATT 66 469 1153 Antisense
ACATTATACCACTGGCTTCTGCTCT 424 105 1173 Antisense
CTCTTCTCGCTTGATCATTGTGTAT 80 231 1204 Antisense
Sequence Source Affymetrix Proprietary Database