[Home] | [Total List]

[187824_at]

Description ZK1290.10 /REP_DB=WormBase Gene ID /WP=CE02080 /TR=SW:Q09337 /GB=AAB93316.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 39.9
(-1.7)
A 		68.3
(0.9)
A 		25.5
(-3)
A 		92.1
(3)
P 		67
B 36
(-0.6)
A 		20
(-3)
A 		27
(-1.9)
A 		59.6
(3)
P 		40
C 46.5
(3)
A 		39.5
(-3)
A 		40.9
(-1.8)
A 		39.9
(-2.7)
A 		7
avr 40.8
(-1.2) 		42.6
(-0.9) 		31.1
(-3) 		63.9
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 41.1
(-2.4)
A 		43
(-2.3)
A 		33.9
(-3)
A 		73.7
(0.2)
P 		107.9
(3)
P 		47.7
(-1.9)
A 		74
B 48.2
(-1.2)
A 		42.3
(-1.6)
A 		24.7
(-3)
P 		101.2
(3)
P 		75.4
(1)
P 		39.7
(-1.8)
P 		77
C 33.1
(-1.9)
A 		15.2
(-3)
A 		17.3
(-2.9)
A 		116.8
(3)
P 		59.7
(-0.4)
P 		71.6
(0.3)
P 		102
avr 40.8
(-1.7) 		33.5
(-2.3) 		25.3
(-3) 		97.2
(3) 		81
(1.6) 		53
(-0.7) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 14.5
(2.8)
A 		14.8
(3)
A 		6.7
(-3)
A 		13.5
(2)
P 		8
B 11.5
(2.1)
A 		4.9
(-3)
A 		6.2
(-2)
A 		12.7
(3)
P 		8
C 15.4
(3)
A 		11.4
(0.2)
A 		14.3
(2.2)
A 		6.7
(-3)
A 		9
avr 13.8
(3) 		10.4
(-1.3) 		9.1
(-3) 		11
(-0.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 7.6
(-3)
A 		15.3
(-1.1)
A 		7.4
(-3)
A 		18.7
(-0.3)
P 		32.6
(3)
P 		11.6
(-2)
A 		25
B 16.8
(-0.4)
A 		14.1
(-1)
A 		6
(-3)
P 		26.8
(2.1)
P 		30.6
(3)
P 		14.8
(-0.9)
P 		25
C 12.3
(-0.6)
A 		4.6
(-2.9)
A 		4.4
(-3)
A 		23.5
(2.8)
P 		19.3
(1.6)
P 		24
(3)
P 		20
avr 12.2
(-1.3) 		11.3
(-1.5) 		5.9
(-3) 		23
(1.8) 		27.5
(3) 		16.8
(0) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187824_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4462
Sequence Type Exemplar sequence
Representative Public ID ZK1290.10 NCBI
Target Description ZK1290.10 /REP_DB=WormBase Gene ID /WP=CE02080 /TR=SW:Q09337 /GB=AAB93316.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063184(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063184 NCBI Caenorhabditis elegans ZK1290.10 (ZK1290.10) mRNA, complete cds. 11/11 None
SNAP00000002679 ENSEMBL cdna:SNAP chromosome:CEL140:II:7551976:7553768:-1 11/11 None
GENEFINDER00000002685 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7551976:7553768:-1 11/11 None
ZK1290.10 ENSEMBL cdna:known chromosome:CEL140:II:7551873:7553828:-1 gene:ZK1290.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7551972-7553722(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1290.10
Entrez Gene 191558 Entrez gene
SwissProt Q09337 EMBL-EBI
WormBase CE36067 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93316 Hypothetical protein ZK1290.10 [Caenorhabditis elegans] ref|NP_495585.2| ZK1290.10 [Caenorhabditis elegans] sp|Q09337|YOFA_CAEEL Hypothetical protein ZK1290.10 in chromosome II precursor 1.0E-155
blast AAB93316 Hypothetical protein ZK1290.10 [Caenorhabditis elegans] ref|NP_495585.2| ZK1290.10 [Caenorhabditis elegans] sp|Q09337|YOFA_CAEEL Hypothetical protein ZK1290.10 in chromosome II precursor 1.0E-151
blast AAB93316 Hypothetical protein ZK1290.10 [Caenorhabditis elegans] ref|NP_495585.2| ZK1290.10 [Caenorhabditis elegans] sp|Q09337|YOFA_CAEEL Hypothetical protein ZK1290.10 in chromosome II precursor 2.0E-96
blast CAE67487 Hypothetical protein CBG12992 [Caenorhabditis briggsae] 2.0E-74
blast CAE67487 Hypothetical protein CBG12992 [Caenorhabditis briggsae] 6.0E-73
blast CAE67487 Hypothetical protein CBG12992 [Caenorhabditis briggsae] 6.0E-33
Sequence
Target Sequence 
>C. ELEGANS:187824_AT
gaattccgaaaagctgatttgtcagataacatggaaaaagagggaaatgaaaatgtgaag
gaccttgtgaaaaagacaactactgtcaacgtgacaaacgactactatattacatcgtcc
tcacctacgactgtgatgttcgaactgcaagaagacactgttggagaagaaaatgttttt
gattttgacaaactgttcgacaagaaaatatatataagaaatgatggttcaacaaccgag
aatacaacagaacagagcacaacggagaaaactgggacaaagaaagggacaatcgaagtg
tcagttgaacttggagaaggagatgacgatgaagagaatgatgatgactcttcagaagag
gaagaaactaagccacctgcccgacatgttagagaagacaagaagcctgtagtttggaaa
aagttcgagatgaactgtgacgaggaggaagatgataagggaaagatatgtaagctctgg
gcagcaggtggtctttgtggaactcataagcctacaatgttcctcttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTCCGAAAAGCTGATTTGTCAG 119 325 532 Antisense
AAGACAACTACTGTCAACGTGACAA 460 151 604 Antisense
ACTACTATATTACATCGTCCTCACC 291 101 632 Antisense
CGTCCTCACCTACGACTGTGATGTT 43 245 647 Antisense
GACTGTGATGTTCGAACTGCAAGAA 524 375 660 Antisense
ACAACAGAACAGAGCACAACGGAGA 347 111 775 Antisense
GAGGAAGAAACTAAGCCACCTGCCC 563 403 889 Antisense
CCACCTGCCCGACATGTTAGAGAAG 503 273 904 Antisense
GTAAGCTCTGGGCAGCAGGTGGTCT 67 463 1001 Antisense
GCAGGTGGTCTTTGTGGAACTCATA 490 311 1015 Antisense
CATAAGCCTACAATGTTCCTCTTCT 341 213 1036 Antisense
Sequence Source Affymetrix Proprietary Database