[Home] | [Total List]

[187823_at]

Description F59E12.10 /REP_DB=WormBase Gene ID /WP=CE11536 /TR=SW:O01901 /GB=AAB54251.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 92      6grp_total > 87      4grp_total > 18      6grp_highest_sub > In      6grp_cgc > 49      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 206.2
(-3)
P 		289.2
(1.9)
P 		212.2
(-2.6)
P 		307.4
(3)
P 		101
B 191.9
(-3)
P 		212.2
(-2.1)
P 		210.7
(-2.2)
P 		330.7
(3)
P 		139
C 172.3
(-3)
P 		236.4
(-0.5)
P 		206.3
(-1.7)
P 		328.6
(3)
P 		156
avr 190.1
(-3) 		245.9
(-0.5) 		209.7
(-2.1) 		322.2
(3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 229
1 2 3 4 5 6 range
A 282
(0.3)
P 		239.1
(-2.2)
P 		225.6
(-3)
P 		235
(-2.5)
P 		299.9
(1.3)
P 		329.7
(3)
P 		104
B 220.3
(-2.5)
P 		212.9
(-2.8)
P 		205.6
(-3)
P 		265.9
(-1.1)
P 		349.1
(1.6)
P 		394.1
(3)
P 		189
C 186.9
(-3)
P 		245.9
(-1.5)
P 		255.9
(-1.2)
P 		236.2
(-1.7)
P 		219.9
(-2.1)
P 		415.5
(3)
P 		229
avr 229.7
(-3) 		232.6
(-2.9) 		229
(-3) 		245.7
(-2.3) 		289.6
(-0.6) 		379.8
(3) 		151
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 75.1
(3)
P 		62.8
(0.5)
P 		55.5
(-0.9)
P 		45
(-3)
P 		30
B 61.2
(0.4)
P 		52.4
(-2)
P 		48.8
(-3)
P 		70.5
(3)
P 		22
C 57
(-2.4)
P 		68
(1.6)
P 		71.9
(3)
P 		55.4
(-3)
P 		17
avr 64.4
(3) 		61.1
(0.3) 		58.7
(-1.6) 		57
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 52
(-2.6)
P 		85
(2.2)
P 		49.1
(-3)
P 		59.6
(-1.5)
P 		90.5
(3)
P 		80.3
(1.5)
P 		41
B 76.7
(-1.3)
P 		70.9
(-1.7)
P 		49.9
(-3)
P 		70.4
(-1.7)
P 		141.8
(2.7)
P 		147
(3)
P 		97
C 69.3
(-1.6)
P 		75
(-1.2)
P 		65.1
(-1.8)
P 		47.5
(-3)
P 		71.1
(-1.5)
P 		139.1
(3)
P 		92
avr 66
(-2) 		77
(-1) 		54.7
(-3) 		59.2
(-2.6) 		101.1
(1.1) 		122.1
(3) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187823_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4070
Sequence Type Exemplar sequence
Representative Public ID F59E12.10 NCBI
Target Description F59E12.10 /REP_DB=WormBase Gene ID /WP=CE11536 /TR=SW:O01901 /GB=AAB54251.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062700(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062700 NCBI Caenorhabditis elegans F59E12.10 (F59E12.10) mRNA, complete cds. 11/11 None
SNAP00000018069 ENSEMBL cdna:SNAP chromosome:CEL140:II:5647175:5647843:-1 11/11 None
GENEFINDER00000018087 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5647175:5647843:-1 11/11 None
F59E12.10 ENSEMBL cdna:known chromosome:CEL140:II:5647175:5647843:-1 gene:F59E12.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5647172-5647841(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ddl-1
Ensembl F59E12.10
Entrez Gene 173954 Entrez gene
SwissProt O01901 EMBL-EBI
WormBase CE11536 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB54251 Hypothetical protein F59E12.10 [Caenorhabditis elegans] ref|NP_495101.1| F59E12.10 [Caenorhabditis elegans] sp|O01901|YIWC_CAEEL Hypothetical protein F59E12.10 in chromosome II 4.0E-91
blast CAE59154 Hypothetical protein CBG02459 [Caenorhabditis briggsae] 2.0E-60
blast AAH10889 CGI-116 protein [Homo sapiens] 8.0E-16
Sequence
Target Sequence 
>C. ELEGANS:187823_AT
tgaatgcgagctccagaaccaaacctgcaatcgatttgaacaaggttcctccgatcgatc
atcaccgtacagcagtaacattcaactgtctcatcatgaaaatgacagaaatgctcaata
atttcggaaataaaatggaagacattttggaaaaggcagagcagagtttagacactgccg
atcgaaagttacgcttgatggaatcgaaattggcaggaatgagtttggaggataaatcaa
ccaccgccacaccatcatcagcaccagaaatagacgaaattcacgaatcgaatcccagct
cttcacaaatcgtggaggaaacagtggaagagaaaccagaagaacatactacgacggttc
ttatcaaggacgacccggcttatagtaaatatttcaaaatgctgaaattgggagtgcttg
aagctggtgtaatacagaaaatgaaatccgaaggcgtcgacccatcaattttgaaacgcg
gtgatgaaccatctcgtccacaggcacagacttcacggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAATGCGAGCTCCAGAACCAAACC 424 575 14 Antisense
TGAACAAGGTTCCTCCGATCGATCA 306 573 50 Antisense
GATCGATCATCACCGTACAGCAGTA 522 417 66 Antisense
GTAACATTCAACTGTCTCATCATGA 254 461 88 Antisense
GACACTGCCGATCGAAAGTTACGCT 167 367 184 Antisense
AATCCCAGCTCTTCACAAATCGTGG 391 167 304 Antisense
TACTACGACGGTTCTTATCAAGGAC 309 637 360 Antisense
ATCAAGGACGACCCGGCTTATAGTA 539 1 376 Antisense
TGAAATCCGAAGGCGTCGACCCATC 542 571 455 Antisense
AACGCGGTGATGAACCATCTCGTCC 137 145 488 Antisense
GTCCACAGGCACAGACTTCACGGAA 709 477 509 Antisense
Sequence Source Affymetrix Proprietary Database