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[187822_at]

Description Y8A9A.1 /REP_DB=WormBase Gene ID /WP=CE21335 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q9TYK3 protein_id:AAD12851.1
Cluster 6grp_total > 41      4grp_total > 06      6grp_cgc > 60      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 45.8
(3)
A 		12.4
(-2.5)
A 		41.7
(2.3)
A 		9.5
(-3)
A 		36
B 54
(3)
A 		23.2
(-3)
A 		35.4
(-0.6)
A 		53.6
(2.9)
A 		31
C 44.7
(-1.9)
A 		40.8
(-2.1)
A 		24.2
(-3)
A 		140.9
(3)
M 		117
avr 48.2
(0.2) 		25.5
(-3) 		33.8
(-1.8) 		68
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 22.5
(-1)
A 		6.2
(-2.6)
A 		65.9
(3)
A 		4.1
(-2.8)
A 		2.5
(-2.9)
A 		1.6
(-3)
A 		64
B 57.2
(3)
A 		46.8
(1.8)
A 		20.9
(-1)
A 		50.9
(2.3)
A 		9.8
(-2.3)
A 		3.2
(-3)
A 		54
C 20.3
(-2.2)
A 		38.2
(1.8)
A 		23.7
(-1.4)
A 		43.5
(3)
A 		35
(1.1)
A 		16.6
(-3)
A 		27
avr 33.3
(2.3) 		30.4
(1.7) 		36.8
(3) 		32.8
(2.2) 		15.8
(-1.2) 		7.1
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 16.7
(3)
A 		2.7
(-2.5)
A 		10.9
(0.7)
A 		1.4
(-3)
A 		15
B 17.2
(3)
A 		5.7
(-3)
A 		8.2
(-1.7)
A 		11.4
(-0)
A 		12
C 14.8
(-0.5)
A 		11.7
(-1.7)
A 		8.4
(-3)
A 		23.8
(3)
M 		15
avr 16.2
(3) 		6.7
(-3) 		9.2
(-1.4) 		12.2
(0.5) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 4.1
(-1.4)
A 		2.2
(-2.2)
A 		14.3
(3)
A 		1
(-2.7)
A 		0.8
(-2.8)
A 		0.4
(-3)
A 		14
B 19.9
(3)
A 		15.6
(1.6)
A 		5.1
(-1.7)
A 		13.5
(0.9)
A 		4
(-2.1)
A 		1.2
(-3)
A 		19
C 7.5
(-1.1)
A 		11.6
(3)
A 		6
(-2.6)
A 		8.7
(0.1)
A 		11.3
(2.7)
A 		5.6
(-3)
A 		6
avr 10.5
(3) 		9.8
(2.5) 		8.5
(1.5) 		7.7
(0.9) 		5.4
(-0.8) 		2.4
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187822_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5492
Sequence Type Exemplar sequence
Representative Public ID Y8A9A.1 NCBI
Target Description Y8A9A.1 /REP_DB=WormBase Gene ID /WP=CE21335 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q9TYK3 protein_id:AAD12851.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y8A9A.1 ENSEMBL cdna:pseudogene chromosome:CEL140:II:3801164:3802582:1 gene:Y8A9A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3801162-3802581(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y8A9A.1
Sequence
Target Sequence 
>C. ELEGANS:187822_AT
aattccgtgcattcccgatgaagttctcaatcgacctgactactttgtagtaacaaccga
tagcactgtttttagcatttgcttttgctcagtgatttgtcttattgggcttcctgtaac
ctattatatagttttcacttgttggcatttactgaatcaaaaatcgcagtctcgagccac
ttctcgacttcagctgcaattttttgtggccctatgcgttcaaatattcattccagttat
gttactcacgattcctataacatacattatgctgtcttcctggttatattaccatagtca
agcattgaataatttgtcactgctggcaatggcatgtcacggagttctttctacattgac
catgcttattgtacataaaccttatcgtcatgcaactcgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCCGTGCATTCCCGATGAAGTT 1 177 420 Antisense
GAAGTTCTCAATCGACCTGACTACT 359 337 439 Antisense
GTGATTTGTCTTATTGGGCTTCCTG 391 485 511 Antisense
ATTGGGCTTCCTGTAACCTATTATA 555 3 523 Antisense
CAAAAATCGCAGTCTCGAGCCACTT 518 189 577 Antisense
CTTCTCGACTTCAGCTGCAATTTTT 377 221 599 Antisense
AATTTTTTGTGGCCCTATGCGTTCA 464 173 617 Antisense
CATTATGCTGTCTTCCTGGTTATAT 497 215 684 Antisense
GTCACTGCTGGCAATGGCATGTCAC 447 465 735 Antisense
ATGGCATGTCACGGAGTTCTTTCTA 302 53 748 Antisense
AAACCTTATCGTCATGCAACTCGTG 313 123 796 Antisense
Sequence Source Affymetrix Proprietary Database