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[187820_at]

Description F58E2.6 /REP_DB=WormBase Gene ID /WP=CE17134 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q9TZ01 protein_id:AAC68968.1
Cluster 6grp_total > 64      4grp_total > 37      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 2.4
(-1.5)
A 		3.1
(-0.6)
A 		1.3
(-3)
A 		5.8
(3)
A 		5
B 17.6
(3)
A 		5.1
(-3)
A 		6.1
(-2.5)
A 		5.4
(-2.9)
A 		13
C 3.8
(-3)
A 		11.2
(3)
A 		3.9
(-2.9)
A 		6
(-1.2)
A 		7
avr 7.9
(3) 		6.5
(1) 		3.8
(-3) 		5.7
(-0.2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 6.5
(-1.6)
A 		5.5
(-2)
A 		5.6
(-1.9)
A 		20.8
(3)
A 		2.8
(-2.8)
A 		2.3
(-3)
A 		19
B 3.1
(-2.9)
A 		4.1
(-2.7)
A 		6.3
(-2.1)
A 		8.8
(-1.4)
A 		2.8
(-3)
A 		25.2
(3)
A 		22
C 4.9
(-2.4)
A 		6.5
(-2.1)
A 		31.3
(3)
A 		3.6
(-2.7)
A 		2.1
(-3)
A 		2.4
(-2.9)
A 		29
avr 4.8
(-1.9) 		5.4
(-1.6) 		14.4
(3) 		11.1
(1.3) 		2.6
(-3) 		10
(0.8) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.9
(3)
A 		0.7
(1)
A 		0.3
(-3)
A 		0.8
(2)
A 		1
B 5.6
(3)
A 		1.2
(-2.9)
A 		1.4
(-2.6)
A 		1.1
(-3)
A 		5
C 1.3
(-2.2)
A 		3.2
(3)
A 		1.4
(-1.9)
A 		1
(-3)
A 		2
avr 2.6
(3) 		1.7
(-0.4) 		1
(-3) 		1
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.2
(-2.2)
A 		2
(-1.2)
A 		1.2
(-2.2)
A 		5.3
(3)
A 		0.8
(-2.7)
A 		0.6
(-3)
A 		5
B 1.1
(-3)
A 		1.4
(-2.8)
A 		1.5
(-2.7)
A 		2.3
(-2.1)
A 		1.1
(-3)
A 		9.4
(3)
A 		8
C 1.8
(-2.1)
A 		2
(-1.9)
A 		8
(3)
A 		0.7
(-3)
A 		0.7
(-3)
A 		0.8
(-2.9)
A 		7
avr 1.4
(-1.9) 		1.8
(-1) 		3.6
(3) 		2.8
(1.2) 		0.9
(-3) 		3.6
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187820_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10821
Sequence Type Exemplar sequence
Representative Public ID F58E2.6 NCBI
Target Description F58E2.6 /REP_DB=WormBase Gene ID /WP=CE17134 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q9TZ01 protein_id:AAC68968.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000029893 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3447213:3448705:-1 11/11 None
F58E2.6 ENSEMBL cdna:pseudogene chromosome:CEL140:IV:3447213:3448705:-1 gene:F58E2.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000029901 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3447218-3448711(-) 100.0 100.0
Public Domain and Genome References
Ensembl F58E2.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T33705 hypothetical protein F58E2.6 - Caenorhabditis elegans 1.0E-149
blast CAB05145 Hypothetical protein C35D6.2 [Caenorhabditis elegans] emb|CAB05144.1| Hypothetical protein C35D6.1 [Caenorhabditis elegans] ref|NP_502947.1| Serpentine Receptor, class H family member (srh-227) [Caenorhabditis elegans] ref|NP_502946.1| Serpentine Receptor, class H family member (srh-228) [Caenorhabditis elegans] 1.0E-115
blast AAC24395 Serpentine receptor, class h protein 222 [Caenorhabditis elegans] ref|NP_500452.1| Serpentine Receptor, class H family member (srh-222) [Caenorhabditis elegans] 2.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-13
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 7.7E-73
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000029893 5 26-48,69-86,126-148,169-191,201-223
Sequence
Target Sequence 
>C. ELEGANS:187820_AT
gaaacacgcgagatatccattcttaggattcttctactttacagcttttgcaacttttgt
tccagtttatattgaaatgccgccagggattgaatataagaaagatttcatcatacaggc
cctcccatgtctacccgaagctgctcgtgctcttcccctctacctttccgttgaaaacaa
atggcaatttctgatgtggaccgtaggtgaatcaactctattctgcgtcacttgtcttgc
actcttcttacaaatctaccgtgctcttcaaacatatggcgaagtccgttcgaaacagac
attggagctccagaagaagctgttcaaggccatttttatgcaattggcaattccattttc
catcatctccatgccaatgatttactacgcctatacaacatttttcaacgctattttgaa
tagtattatgtttattataatctcatgtcatggtcttatatcaacaattgtgatgctcac
tgtgcagaagccttaccgagagtttattcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACACGCGAGATATCCATTCTTA 587 355 249 Antisense
ACAGCTTTTGCAACTTTTGTTCCAG 70 109 289 Antisense
ATTGAAATGCCGCCAGGGATTGAAT 417 5 319 Antisense
AAAGATTTCATCATACAGGCCCTCC 228 123 349 Antisense
TCTACCGTGCTCTTCAAACATATGG 300 615 503 Antisense
TCGAAACAGACATTGGAGCTCCAGA 243 601 538 Antisense
GAAGCTGTTCAAGGCCATTTTTATG 597 343 564 Antisense
GATTTACTACGCCTATACAACATTT 34 429 627 Antisense
TCTCATGTCATGGTCTTATATCAAC 63 611 689 Antisense
GATGCTCACTGTGCAGAAGCCTTAC 580 413 720 Antisense
GAAGCCTTACCGAGAGTTTATTCTA 33 333 735 Antisense
Sequence Source Affymetrix Proprietary Database