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[187819_s_at]

Description F18A1.6 /REP_DB=WormBase Gene ID /WP=CE04406 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q19535 protein_id:AAB63402.1
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 78      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 83      6grp_total > 78      4grp_total > 15      6grp_highest_sub > Da      6grp_high1_sub > Cu      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 367
(-0.9)
P 		358.4
(-1.6)
P 		343
(-3)
P 		410.9
(3)
P 		68
B 434.8
(2.1)
P 		311.2
(-3)
P 		335.8
(-2)
P 		457.4
(3)
P 		146
C 446.7
(3)
P 		302
(-3)
P 		311.9
(-2.6)
P 		425.2
(2.1)
P 		145
avr 416.2
(2.2) 		323.9
(-3) 		330.2
(-2.6) 		431.2
(3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 276
1 2 3 4 5 6 range
A 397.9
(-1.9)
P 		389
(-2.1)
P 		353.4
(-3)
P 		405.3
(-1.7)
P 		452
(-0.5)
P 		592.9
(3)
P 		240
B 377.6
(-2.5)
P 		389
(-2.2)
P 		370.8
(-2.7)
P 		360.7
(-3)
P 		434.9
(-0.9)
P 		577.2
(3)
P 		217
C 425.9
(-1.7)
P 		413.5
(-2)
P 		370.4
(-3)
P 		464.1
(-0.8)
P 		477.3
(-0.5)
P 		629
(3)
P 		259
avr 400.5
(-2.1) 		397.2
(-2.2) 		364.9
(-3) 		410
(-1.8) 		454.7
(-0.7) 		599.7
(3) 		235
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 133.6
(3)
P 		77.8
(-1.6)
P 		89.7
(-0.6)
P 		60.2
(-3)
P 		73
B 138.7
(3)
P 		76.9
(-3)
P 		77.8
(-2.9)
P 		97.5
(-1)
P 		62
C 147.9
(3)
P 		86.8
(-1.8)
P 		108.7
(-0.1)
P 		71.7
(-3)
P 		76
avr 140.1
(3) 		80.5
(-2.6) 		92.1
(-1.5) 		76.5
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 73.3
(-3)
P 		138.4
(2.5)
P 		77
(-2.7)
P 		102.8
(-0.5)
P 		136.4
(2.3)
P 		144.3
(3)
P 		71
B 131.4
(-1)
P 		129.5
(-1.1)
P 		90
(-3)
P 		95.5
(-2.7)
P 		176.7
(1.2)
P 		215.2
(3)
P 		125
C 157.8
(0.3)
P 		126.2
(-1.3)
P 		94.3
(-2.9)
P 		93.3
(-3)
P 		154.5
(0.1)
P 		210.5
(3)
P 		117
avr 120.8
(-1) 		131.4
(-0.4) 		87.1
(-3) 		97.2
(-2.4) 		155.9
(1) 		190
(3) 		103
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187819_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4132
Sequence Type Exemplar sequence
Representative Public ID F18A1.6 NCBI
Target Description F18A1.6 /REP_DB=WormBase Gene ID /WP=CE04406 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q19535 protein_id:AAB63402.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063202(11), NM_063203(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063202 NCBI Caenorhabditis elegans F18A1.6b (F18A1.6) mRNA, complete cds. 11/11 None
NM_063203 NCBI Caenorhabditis elegans F18A1.6a (F18A1.6) mRNA, complete cds. 11/11 None
SNAP00000013710 ENSEMBL cdna:SNAP chromosome:CEL140:II:7658403:7662029:-1 11/11 None
GENEFINDER00000013724 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7658403:7662029:-1 11/11 None
F18A1.6b.1 ENSEMBL cdna:known chromosome:CEL140:II:7658250:7662440:-1 gene:F18A1.6 11/11 None
F18A1.6b.2 ENSEMBL cdna:known chromosome:CEL140:II:7658265:7662206:-1 gene:F18A1.6 11/11 None
F18A1.6a ENSEMBL cdna:known chromosome:CEL140:II:7658403:7662048:-1 gene:F18A1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7658399-7662026(-) 100.0 100.0
Public Domain and Genome References
Ensembl F18A1.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK67247 Hypothetical protein F18A1.6b [Caenorhabditis elegans] ref|NP_495603.1| F18A1.6b [Caenorhabditis elegans] 0.0
blast AAB63402 Hypothetical protein F18A1.6a [Caenorhabditis elegans] ref|NP_495604.1| F18A1.6a [Caenorhabditis elegans] 0.0
blast CAE67508 Hypothetical protein CBG13024 [Caenorhabditis briggsae] 0.0
blast CAA10464 F18A1.6 protein [Caenorhabditis briggsae] emb|CAA10308.1| F18A1.6 protein [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:187819_S_AT
atactcttgcattttttgttcctgaagcacatcaatggtgttgtctaagagcttaccgac
acaagtataatccatatttaaaattacaaggtgtacgaagggcagaactcccttcagtta
taatgagcggaacatcaagcccttggcctatttgtatcatcgacattgatcggtcagcag
tgtgtatgtcagcttcatatcaaaaacatcgaattttacgagcacgaaatgattctcgag
gggtacggttgattcttgaacatgcaggcgtgatggtttcgaagaacacaaaaattccac
agatagaactgtcaccttgccgaactcttgaatcagtgaatacattcctaaagcaaatgg
atttacttccaatggaagaatcagttcgttctggattctgtactcaaataatgctctatt
tcgataatcttgccgctgcattcattgcttttgtccgtgatgctagtcgccccggaaatg
acgaaaaagagtgcggaacacgatccaaatcgttcagtttaactgaatgccgaaaatccc
tggatctgaccaacgatgctctgttcaacgcggttctagcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACTCTTGCATTTTTTGTTCCTGA 69 25 1580 Antisense
GGCAGAACTCCCTTCAGTTATAATG 89 535 1680 Antisense
AATGAGCGGAACATCAAGCCCTTGG 494 163 1701 Antisense
CCCTTGGCCTATTTGTATCATCGAC 299 257 1719 Antisense
GATCGGTCAGCAGTGTGTATGTCAG 22 419 1747 Antisense
GATTCTCGAGGGGTACGGTTGATTC 494 301 1810 Antisense
GAACATGCAGGCGTGATGGTTTCGA 523 351 1837 Antisense
TCACCTTGCCGAACTCTTGAATCAG 94 627 1891 Antisense
GTTCGTTCTGGATTCTGTACTCAAA 117 443 1963 Antisense
ATGCTCTATTTCGATAATCTTGCCG 305 43 1990 Antisense
TGCTCTGTTCAACGCGGTTCTAGCG 578 579 2136 Antisense
Sequence Source Affymetrix Proprietary Database