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[187818_s_at]

Description F26H11.2 /REP_DB=WormBase Gene ID /WP=CE15908 /CHR=2 /FEA=Sanger Annotation /DEF=(HINXTON) TR:O45409 protein_id:CAB04197.1
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 06      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 21      6grp_total > 07      4grp_total > 21      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1327
1 2 3 4 range
A 1602.1
(0.5)
P 		1258.1
(-1.1)
P 		831.6
(-3)
P 		2158.4
(3)
P 		1327
B 1559.8
(0.2)
P 		1261.8
(-1.2)
P 		891.8
(-3)
P 		2151.2
(3)
P 		1259
C 1681.4
(1)
P 		1370.7
(-0.8)
P 		978.5
(-3)
P 		2038.9
(3)
P 		1060
avr 1614.4
(0.5) 		1296.9
(-1) 		900.6
(-3) 		2116.2
(3) 		1216

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 880
1 2 3 4 5 6 range
A 1499.1
(3)
P 		1423.4
(2.2)
P 		1118.4
(-1)
P 		1185.2
(-0.3)
P 		930.3
(-3)
P 		1169.7
(-0.5)
P 		569
B 1581.6
(3)
P 		1247
(0.2)
P 		1191.7
(-0.2)
P 		1126.7
(-0.7)
P 		891.4
(-2.7)
P 		853.7
(-3)
P 		728
C 1734.1
(3)
P 		1185.7
(-0.9)
P 		1194.2
(-0.8)
P 		1126.9
(-1.3)
P 		885.3
(-3)
P 		886.2
(-3)
P 		849
avr 1604.9
(3) 		1285.4
(0.3) 		1168.1
(-0.7) 		1146.3
(-0.9) 		902.3
(-3) 		969.9
(-2.4) 		703
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 377
1 2 3 4 range
A 583.3
(3)
P 		273.1
(-2.1)
P 		217.4
(-3)
P 		316
(-1.4)
P 		366
B 497.4
(3)
P 		311.6
(-0.8)
P 		206.7
(-3)
P 		458.4
(2.2)
P 		291
C 556.6
(3)
P 		394.1
(-1.5)
P 		341
(-3)
P 		343.8
(-2.9)
P 		216
avr 545.8
(3) 		326.3
(-1.5) 		255
(-3) 		372.7
(-0.6) 		291

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 416
1 2 3 4 5 6 range
A 276.3
(-2.3)
P 		506.2
(3)
P 		243.6
(-3)
P 		300.6
(-1.7)
P 		280.7
(-2.2)
P 		284.8
(-2.1)
P 		263
B 550.3
(3)
P 		415.1
(-0.1)
P 		289.4
(-3)
P 		298.4
(-2.8)
P 		362.1
(-1.3)
P 		318.3
(-2.3)
P 		261
C 642.8
(3)
P 		361.8
(-1.1)
P 		304
(-1.9)
P 		226.6
(-3)
P 		286.5
(-2.1)
P 		296.7
(-2)
P 		416
avr 489.8
(3) 		427.7
(1.3) 		279
(-2.9) 		275.2
(-3) 		309.8
(-2) 		299.9
(-2.3) 		215
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187818_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2619
Sequence Type Exemplar sequence
Representative Public ID F26H11.2 NCBI
Target Description F26H11.2 /REP_DB=WormBase Gene ID /WP=CE15908 /CHR=2 /FEA=Sanger Annotation /DEF=(HINXTON) TR:O45409 protein_id:CAB04197.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064594(11), NM_001026946(11), NM_064593(11), NM_001026947(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064594 NCBI Caenorhabditis elegans F26H11.2a (Bromodomain) mRNA, complete cds. 11/11 None
NM_001026946 NCBI Caenorhabditis elegans F26H11.2c (Bromodomain) mRNA, complete cds. 11/11 None
NM_064593 NCBI Caenorhabditis elegans F26H11.2b (Bromodomain) mRNA, complete cds. 11/11 None
NM_001026947 NCBI Caenorhabditis elegans F26H11.2d (Bromodomain) mRNA, complete cds. 11/11 None
SNAP00000043651 ENSEMBL cdna:SNAP chromosome:CEL140:II:14390610:14400768:1 11/11 None
GENEFINDER00000043659 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14390610:14400768:1 11/11 None
F26H11.2b ENSEMBL cdna:known chromosome:CEL140:II:14390291:14400942:1 gene:F26H11.2 11/11 None
F26H11.2a.1 ENSEMBL cdna:known chromosome:CEL140:II:14390291:14401004:1 gene:F26H11.2 11/11 None
F26H11.2a.2 ENSEMBL cdna:known chromosome:CEL140:II:14390291:14445774:1 gene:F26H11.2 11/11 None
F26H11.2c ENSEMBL cdna:known chromosome:CEL140:II:14390291:14407795:1 gene:F26H11.2 11/11 A 
F26H11.2d.2 ENSEMBL cdna:known chromosome:CEL140:II:14399946:14407648:1 gene:F26H11.2 11/11 None
F26H11.2d.1 ENSEMBL cdna:known chromosome:CEL140:II:14399948:14407648:1 gene:F26H11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175098 7 4 NM_001026946 187818_s_at (11), 188917_s_at (11)
NM_001026947 187818_s_at (11), 188917_s_at (11)
NM_001026948 188917_s_at (11)
NM_001026949 188917_s_at (11)
NM_001026950 188917_s_at (11)
NM_064593 187818_s_at (11)
NM_064594 187818_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14390287-14400765(+) 100.0 100.0
Public Domain and Genome References
Ensembl F26H11.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04197 Hypothetical protein F26H11.2a [Caenorhabditis elegans] ref|NP_496995.2| F26H11.2a [Caenorhabditis elegans] 0.0
blast CAC42289 Hypothetical protein F26H11.2b [Caenorhabditis elegans] ref|NP_496994.2| F26H11.2b [Caenorhabditis elegans] 0.0
blast CAH04722 Hypothetical protein F26H11.2c [Caenorhabditis elegans] ref|NP_001022117.1| F26H11.2c [Caenorhabditis elegans] 0.0
blast CAB54234 Hypothetical protein F26H11.2d [Caenorhabditis elegans] ref|NP_001022118.1| F26H11.2d [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004022 EMBL-EBI DDT domain 4.8E-31
Pfam IPR004022 EMBL-EBI DDT domain 4.8E-31
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 1.0E-5
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 3.8E-15
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 4.3E-18
Pfam IPR001487 EMBL-EBI Bromodomain 5.4E-35
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 3.8E-15
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 4.3E-18
Pfam IPR001487 EMBL-EBI Bromodomain 5.4E-35
Sequence
Target Sequence 
>C. ELEGANS:187818_S_AT
caacagcaacatccgcaaagtcgcccggtttactccacgccggcccagatgatccgtact
actcaacctggcggcgtcaaacacaacgtgatcctcatgaaagcatcggacggaacacaa
aaaatggttttaaaaccgggtcagtttcctccgggaacggttatttcgactggacagcga
gtcgtgccttatcgacaacccacggctgttcaacaacgccagttgtatacggcaactcca
ggcacacgagttgtgcgaattccgaatgcaaatggcggagcgcctcgtcaacaagatcat
caagttatgaggcgtgttgtacaagcatcaggaccacgagcaatggaatatatggatgat
caagggacaccaccaccaggccaacaagttcgctacgtgcttcaaggcggaaactccggt
acaccaaatgtaaatcctccaaaagtgtcgtctcgtggagggccgcgtggcggattgact
atgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACAGCAACATCCGCAAAGTCGCC 623 189 4552 Antisense
CAGATGATCCGTACTACTCAACCTG 124 207 4597 Antisense
GGCGGCGTCAAACACAACGTGATCC 708 531 4621 Antisense
GGAACGGTTATTTCGACTGGACAGC 256 529 4705 Antisense
ACTGGACAGCGAGTCGTGCCTTATC 467 95 4720 Antisense
CACGGCTGTTCAACAACGCCAGTTG 276 197 4752 Antisense
TGCAAATGGCGGAGCGCCTCGTCAA 340 577 4818 Antisense
GTTGTACAAGCATCAGGACCACGAG 255 437 4867 Antisense
CAACAAGTTCGCTACGTGCTTCAAG 330 189 4933 Antisense
AAATCCTCCAAAAGTGTCGTCTCGT 502 117 4983 Antisense
GGGCCGCGTGGCGGATTGACTATGC 581 491 5011 Antisense
Sequence Source Affymetrix Proprietary Database