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[187817_at] 7TM chemoreceptor, srh family

Description M02H5.11 /REP_DB=WormBase Gene ID /WP=CE25949 /GEN=srh-35 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 92      4grp_total > 18      6grp_cgc > 98      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 6.8
(-3)
A 		13.6
(-2.7)
A 		38.2
(-1.6)
A 		145.7
(3)
A 		139
B 33
(-1.6)
A 		42.1
(3)
A 		30.3
(-3)
A 		36.9
(0.4)
A 		12
C 22.2
(-2.1)
A 		54.9
(1.4)
A 		13.7
(-3)
A 		69.6
(3)
A 		56
avr 20.7
(-3) 		36.9
(-1.5) 		27.4
(-2.4) 		84.1
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 24.8
(-0.6)
A 		4.3
(-3)
A 		50
(2.3)
A 		56.4
(3)
A 		49.9
(2.3)
A 		8.4
(-2.5)
A 		52
B 32.5
(1.4)
A 		33.5
(1.6)
A 		19.8
(-1.4)
A 		24.5
(-0.4)
A 		39.6
(3)
A 		12.9
(-3)
A 		27
C 27.2
(1.6)
A 		34.8
(3)
A 		1.8
(-3)
A 		8.4
(-1.8)
A 		34.6
(3)
A 		30.9
(2.3)
A 		33
avr 28.2
(-0.3) 		24.2
(-1.3) 		23.9
(-1.4) 		29.8
(0.1) 		41.4
(3) 		17.4
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 2.5
(-3)
A 		2.9
(-2.9)
A 		10
(-0.6)
A 		21.3
(3)
A 		19
B 10.5
(3)
A 		10.4
(2.8)
A 		7
(-3)
A 		7.9
(-1.5)
A 		4
C 7.4
(-1.6)
A 		15.8
(3)
A 		4.8
(-3)
A 		11.7
(0.8)
A 		11
avr 6.8
(-3) 		9.7
(-0.4) 		7.3
(-2.6) 		13.6
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 4.6
(-1.6)
A 		1.5
(-3)
A 		10.9
(1.1)
A 		14.3
(2.6)
A 		15.1
(3)
A 		2
(-2.8)
A 		14
B 11.3
(0.5)
A 		11.2
(0.4)
A 		4.8
(-3)
A 		6.5
(-2.1)
A 		16.1
(3)
A 		4.8
(-3)
A 		11
C 10.1
(2.4)
A 		10.6
(2.7)
A 		0.5
(-3)
A 		1.7
(-2.3)
A 		11.2
(3)
A 		10.4
(2.6)
A 		11
avr 8.7
(-0.7) 		7.8
(-1.3) 		5.4
(-3) 		7.5
(-1.6) 		14.1
(3) 		5.7
(-2.8) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187817_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15873
Sequence Type Exemplar sequence
Representative Public ID M02H5.11 NCBI
Target Description M02H5.11 /REP_DB=WormBase Gene ID /WP=CE25949 /GEN=srh-35 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070804(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070804 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-35) (srh-35) mRNA, complete cds. 11/11 None
GENEFINDER00000034180 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:441946:448367:-1 10/11 None
M02H5.11 ENSEMBL cdna:known chromosome:CEL140:V:447398:449059:-1 gene:M02H5.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:447397-449059(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-35
Ensembl M02H5.11
Entrez Gene 191854 Entrez gene
SwissProt Q966I3 EMBL-EBI
WormBase CE25949 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503205 Serpentine Receptor, class H family member (srh-35) [Caenorhabditis elegans] gb|AAK84550.1| Serpentine receptor, class h protein 35 [Caenorhabditis elegans] 1.0E-173
blast NP_503204 Serpentine Receptor, class H family member (srh-34) [Caenorhabditis elegans] gb|AAK84549.1| Serpentine receptor, class h protein 34 [Caenorhabditis elegans] 1.0E-131
blast NP_503204 Serpentine Receptor, class H family member (srh-34) [Caenorhabditis elegans] gb|AAK84549.1| Serpentine receptor, class h protein 34 [Caenorhabditis elegans] 1.0E-130
blast NP_503205 Serpentine Receptor, class H family member (srh-35) [Caenorhabditis elegans] gb|AAK84550.1| Serpentine receptor, class h protein 35 [Caenorhabditis elegans] 1.0E-105
blast CAE58260 Hypothetical protein CBG01361 [Caenorhabditis briggsae] 3.0E-99
blast NP_503203 Serpentine Receptor, class H family member (srh-33) [Caenorhabditis elegans] gb|AAK84559.1| Serpentine receptor, class h protein 33 [Caenorhabditis elegans] 4.0E-85
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503205.1 6 21-38,93-115,136-158,199-221,251-273,293-312
M02H5.11 6 21-38,93-115,136-158,199-221,251-273,293-312
GENEFINDER00000034180 11 22-44,64-86,127-149,179-201,262-284,305-327,371-393,420-442,479-501,522-544,591-613
Sequence
Target Sequence 
>C. ELEGANS:187817_AT
gatctcattgttcctggcaacgatattttagcgaaggcctagtctactcggctgttgctg
gaatagggctctggactataccgacgactgtttggggtctgccaaatcagtatactgaga
agctgagtattgtgtctagcggaaagttctatcccgactgcttatgggattcaactgtgg
ttgtaacaagtgggagtgactcggaaagtgaaaattttgtttcaattctcataattttga
actcgatatctattggaatagtaatatttgcgtcggcaaaagccgcttttcattttcttg
caaagcggatggaagcgcaaaacgcgtctgtaactacaaggaggatgcaccagaagttca
atgagcggactatttttcaggcaacactttatctctcctttatgtgcattccatttatca
tgatctacatcactcttcttctcaacgttagaatccaaggactcgcatattttatagact
ttgcgtttgaaaatcgtccggtggcttgtatcatctcgttttttttgtatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTCATTGTTCCTGGCAACGATA 447 419 392 Antisense
TAGTCTACTCGGCTGTTGCTGGAAT 374 653 431 Antisense
TACCGACGACTGTTTGGGGTCTGCC 460 647 470 Antisense
AAGTTCTATCCCGACTGCTTATGGG 104 157 535 Antisense
GCGCAAAACGCGTCTGTAACTACAA 18 279 706 Antisense
GAGCGGACTATTTTTCAGGCAACAC 287 383 754 Antisense
TCAGGCAACACTTTATCTCTCCTTT 253 623 768 Antisense
TATCTCTCCTTTATGTGCATTCCAT 475 659 781 Antisense
TCATGATCTACATCACTCTTCTTCT 342 623 809 Antisense
AAATCGTCCGGTGGCTTGTATCATC 193 119 882 Antisense
GTATCATCTCGTTTTTTTTGTATTA 186 455 899 Antisense
Sequence Source Affymetrix Proprietary Database