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[187816_at] 7TM chemoreceptor, srh family

Description M02H5.10 /REP_DB=WormBase Gene ID /WP=CE25948 /GEN=srh-34 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 57      4grp_total > 17      6grp_cgc > 26      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 18.5
(-2.6)
A 		16.2
(-3)
A 		35.8
(0.6)
A 		49
(3)
A 		33
B 23.7
(-3)
A 		60.7
(3)
P 		50.6
(1.4)
M 		56.1
(2.3)
A 		37
C 36.2
(-0)
A 		28.4
(-0.8)
A 		7.2
(-3)
A 		65.5
(3)
P 		58
avr 26.1
(-3) 		35.1
(-1.2) 		31.2
(-2) 		56.9
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 33.5
(2.3)
A 		8.2
(-2.4)
A 		32.3
(2)
A 		37.5
(3)
A 		4.9
(-3)
A 		29.8
(1.6)
P 		33
B 35.3
(3)
A 		28.8
(1.6)
A 		8.3
(-3)
A 		10.1
(-2.6)
A 		15.6
(-1.4)
A 		8.7
(-2.9)
A 		27
C 1.9
(-3)
A 		26.1
(1.1)
A 		19.5
(-0)
A 		29.8
(1.7)
A 		31.7
(2)
A 		37.4
(3)
P 		36
avr 23.6
(1.4) 		21
(-0.4) 		20
(-1.1) 		25.8
(3) 		17.4
(-3) 		25.3
(2.6) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 6.7
(0.3)
A 		3.5
(-3)
A 		9.3
(3)
A 		7.2
(0.8)
A 		6
B 7.6
(-3)
A 		15
(3)
P 		11.7
(0.3)
M 		12
(0.6)
A 		7
C 12
(3)
A 		8.2
(0.6)
A 		2.5
(-3)
A 		11
(2.4)
P 		10
avr 8.8
(-0.4) 		8.9
(-0.1) 		7.8
(-3) 		10.1
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 6.2
(0.5)
A 		2.9
(-2)
A 		7
(1.1)
A 		9.5
(3)
A 		1.5
(-3)
A 		7.3
(1.4)
P 		8
B 12.3
(3)
A 		9.6
(1.4)
A 		2
(-3)
A 		2.7
(-2.6)
A 		6.3
(-0.5)
A 		3.2
(-2.3)
A 		10
C 0.7
(-3)
A 		8
(0.7)
A 		5
(-0.8)
A 		6
(-0.3)
A 		10.3
(1.9)
A 		12.5
(3)
P 		12
avr 6.4
(0.4) 		6.8
(1.2) 		4.7
(-3) 		6.1
(-0.2) 		6
(-0.4) 		7.7
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187816_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15758
Sequence Type Exemplar sequence
Representative Public ID M02H5.10 NCBI
Target Description M02H5.10 /REP_DB=WormBase Gene ID /WP=CE25948 /GEN=srh-34 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070803(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070803 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-34) (srh-34) mRNA, complete cds. 11/11 None
SNAP00000034162 ENSEMBL cdna:SNAP chromosome:CEL140:V:444722:445798:-1 11/11 None
GENEFINDER00000034180 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:441946:448367:-1 10/11 None
M02H5.10 ENSEMBL cdna:known chromosome:CEL140:V:444722:446503:-1 gene:M02H5.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:444721-446503(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-34
Ensembl M02H5.10
Entrez Gene 191853 Entrez gene
SwissProt Q966I4 EMBL-EBI
WormBase CE25948 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503204 Serpentine Receptor, class H family member (srh-34) [Caenorhabditis elegans] gb|AAK84549.1| Serpentine receptor, class h protein 34 [Caenorhabditis elegans] 0.0
blast NP_503204 Serpentine Receptor, class H family member (srh-34) [Caenorhabditis elegans] gb|AAK84549.1| Serpentine receptor, class h protein 34 [Caenorhabditis elegans] 1.0E-155
blast NP_503205 Serpentine Receptor, class H family member (srh-35) [Caenorhabditis elegans] gb|AAK84550.1| Serpentine receptor, class h protein 35 [Caenorhabditis elegans] 1.0E-148
blast NP_503204 Serpentine Receptor, class H family member (srh-34) [Caenorhabditis elegans] gb|AAK84549.1| Serpentine receptor, class h protein 34 [Caenorhabditis elegans] 1.0E-131
blast CAE58260 Hypothetical protein CBG01361 [Caenorhabditis briggsae] 1.0E-113
blast NP_503205 Serpentine Receptor, class H family member (srh-35) [Caenorhabditis elegans] gb|AAK84550.1| Serpentine receptor, class h protein 35 [Caenorhabditis elegans] 1.0E-113
blast NP_503205 Serpentine Receptor, class H family member (srh-35) [Caenorhabditis elegans] gb|AAK84550.1| Serpentine receptor, class h protein 35 [Caenorhabditis elegans] 1.0E-105
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503204.1 6 21-38,93-115,136-158,202-224,251-273,293-315
M02H5.10 6 21-38,93-115,136-158,202-224,251-273,293-315
SNAP00000034162 4 87-109,153-175,202-224,244-266
GENEFINDER00000034180 11 22-44,64-86,127-149,179-201,262-284,305-327,371-393,420-442,479-501,522-544,591-613
Sequence
Target Sequence 
>C. ELEGANS:187816_AT
ggcgaaggtcttgtctatacattggttgctgtaatcggactttggacaataccaatgact
ttttggtgcctacccgatcagtatactgagaaatttaggattgtttataacgcgaagttc
tatcccgacggcttgtgggattcaactgttgtagtgacgagtgggagtgatttggaaagt
gaacgttttgtttctattatcacaattttgaattcaataattgtcggaatactgatattt
gcttcatcgaaagctgctttttattttctagaaaagcgaatggaagtggaaaacgagtct
gaagctacaaggagaatgcatcagaaattcaatcagcggaccatttttcaggcaattctc
tacctatccttcatgtgcattccaatttccatgctctacctcaccattctcctcgacgtc
aaaatcaaagggctcacatatttcattgatttttctattgaaaatcacccggtggcatgt
atcatttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGAAGGTCTTGTCTATACATTGG 417 541 421 Antisense
TGGTTGCTGTAATCGGACTTTGGAC 597 549 443 Antisense
TTTTGGTGCCTACCCGATCAGTATA 706 675 481 Antisense
TATAACGCGAAGTTCTATCCCGACG 38 639 526 Antisense
CCGACGGCTTGTGGGATTCAACTGT 703 263 545 Antisense
ATCAGCGGACCATTTTTCAGGCAAT 247 23 752 Antisense
TACCTATCCTTCATGTGCATTCCAA 209 651 781 Antisense
TGCATTCCAATTTCCATGCTCTACC 515 579 796 Antisense
CATTCTCCTCGACGTCAAAATCAAA 418 215 825 Antisense
ATCAAAGGGCTCACATATTTCATTG 551 25 844 Antisense
ATCACCCGGTGGCATGTATCATTTC 104 29 884 Antisense
Sequence Source Affymetrix Proprietary Database