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[187815_s_at]

Description Y39E4B.12 /REP_DB=WormBase Gene ID /WP=CE24240 /CHR=3 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q9U2J8 protein_id:CAB54435.1
Cluster 6grp_high1_10_10 > 0      4grp_high_8_8 > 59      6grp_total > 03      4grp_total > 59      6grp_cgc > 50      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 101.9
(2.6)
P 		57.9
(-3)
P 		105.2
(3)
P 		64.3
(-2.2)
A 		47
B 77.8
(-2.5)
P 		133.3
(3)
M 		130.5
(2.7)
P 		73
(-3)
P 		60
C 125.4
(2.8)
P 		127.4
(3)
P 		122.8
(2.6)
P 		56.4
(-3)
M 		71
avr 101.7
(1.1) 		106.2
(1.5) 		119.5
(3) 		64.6
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 62.9
(-2.9)
P 		78.7
(-0.1)
P 		86.5
(1.2)
P 		85.7
(1.1)
P 		96.4
(3)
P 		62.6
(-3)
A 		34
B 100
(1.9)
P 		106
(2.7)
P 		84.5
(-0)
A 		108.4
(3)
P 		107.2
(2.8)
P 		61.2
(-3)
P 		47
C 151.7
(3)
P 		96.5
(-0.9)
P 		81.4
(-2)
P 		123.3
(1)
P 		66.6
(-3)
P 		73.1
(-2.5)
P 		85
avr 104.9
(2.9) 		93.7
(1.2) 		84.1
(-0.2) 		105.8
(3) 		90.1
(0.7) 		65.6
(-3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 37.1
(3)
P 		12.6
(-2.3)
P 		27.5
(0.9)
P 		9.4
(-3)
A 		28
B 24.8
(0.2)
P 		32.9
(3)
M 		30.2
(2.1)
P 		15.6
(-3)
P 		17
C 41.5
(2.8)
P 		36.6
(1.9)
P 		42.8
(3)
P 		9.5
(-3)
M 		33
avr 34.5
(3) 		27.4
(1.1) 		33.5
(2.7) 		11.5
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 11.6
(-3)
P 		28
(2.6)
P 		18.8
(-0.5)
P 		21.7
(0.5)
P 		29.1
(3)
P 		15.2
(-1.8)
A 		18
B 34.8
(0.7)
P 		35.3
(0.8)
P 		20.5
(-3)
A 		28.7
(-0.9)
P 		43.6
(3)
P 		22.8
(-2.4)
P 		23
C 56.2
(3)
P 		29.4
(-1.5)
P 		20.7
(-3)
P 		24.8
(-2.3)
P 		21.6
(-2.8)
P 		24.5
(-2.4)
P 		36
avr 34.2
(3) 		30.9
(1.6) 		20
(-3) 		25.1
(-0.8) 		31.4
(1.8) 		20.8
(-2.7) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187815_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7583
Sequence Type Exemplar sequence
Representative Public ID Y39E4B.12 NCBI
Target Description Y39E4B.12 /REP_DB=WormBase Gene ID /WP=CE24240 /CHR=3 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q9U2J8 protein_id:CAB54435.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027679(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027679 NCBI Caenorhabditis elegans GLYcosylation related family member (gly-5) (gly-5) mRNA, complete cds. 11/11 None
Y39E4B.12a.2 ENSEMBL cdna:known chromosome:CEL140:III:13186908:13204456:1 gene:Y39E4B.12 11/11 A 
Y39E4B.12a.1 ENSEMBL cdna:known chromosome:CEL140:III:13187625:13204456:1 gene:Y39E4B.12 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176736 3 1 NM_001027679 187815_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13187647-13203965(+) 99.84 100.0
Public Domain and Genome References
Ensembl Y39E4B.12
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54435 Hypothetical protein Y39E4B.12a [Caenorhabditis elegans] ref|NP_001022850.1| GLYcosylation related family member (gly-5) [Caenorhabditis elegans] sp|Q95ZJ1|GALT5_CAEEL Polypeptide N-acetylgalactosaminyltransferase 5 (Protein-UDP acetylgalactosaminyltransferase 5) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 5) (pp-GaNTase 5) 0.0
blast AAC13672 GLY5b; ppGaNTase [Caenorhabditis elegans] 0.0
blast CAC42369 Hypothetical protein Y39E4B.12c [Caenorhabditis elegans] ref|NP_001022852.1| GLYcosylation related family member (gly-5) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 3.5E-9
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 1.6E-8
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 1.8E-7
Pfam IPR001173 EMBL-EBI Glycosyl transferase, family 2 9.1E-40
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022850.1 1 12-31
Y39E4B.12a.2 1 12-31
Y39E4B.12a.1 1 12-31
Sequence
Target Sequence 
>C. ELEGANS:187815_S_AT
gccaaaggagaggtgcgcaacagtgcggtgcaacccgcacgatgtctcgattgcatggta
ggccggcacgaaaagaatcgtcccgtcggtacgtaccagtgtcacggtcagggcggaaat
cagtact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAAAGGAGAGGTGCGCAACAGTG 521 275 1474 Antisense
GGTGCGCAACAGTGCGGTGCAACCC 698 501 1485 Antisense
AGTGCGGTGCAACCCGCACGATGTC 477 59 1495 Antisense
CCCGCACGATGTCTCGATTGCATGG 74 261 1507 Antisense
TGTCTCGATTGCATGGTAGGCCGGC 593 555 1516 Antisense
GATTGCATGGTAGGCCGGCACGAAA 80 433 1522 Antisense
GGCACGAAAAGAATCGTCCCGTCGG 671 533 1538 Antisense
CCGTCGGTACGTACCAGTGTCACGG 660 263 1556 Antisense
ACGTACCAGTGTCACGGTCAGGGCG 437 93 1564 Antisense
CCAGTGTCACGGTCAGGGCGGAAAT 65 271 1569 Antisense
CACGGTCAGGGCGGAAATCAGTACT 113 199 1576 Antisense
Sequence Source Affymetrix Proprietary Database