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[187814_s_at]

Description C37H5.13 /REP_DB=WormBase Gene ID /WP=CE08636 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:P91145 protein_id:AAB42376.1
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 40      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 42      6grp_total > 42      4grp_total > 04      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 311
1 2 3 4 range
A 690.8
(1.4)
P 		538.9
(-2)
P 		494.6
(-3)
P 		762
(3)
P 		267
B 545.6
(-2.6)
P 		534.1
(-2.8)
P 		526.9
(-3)
P 		805.1
(3)
P 		278
C 630.4
(-1.6)
P 		583.1
(-3)
P 		584.3
(-3)
P 		792.2
(3)
P 		209
avr 622.3
(-0.9) 		552
(-2.6) 		535.3
(-3) 		786.4
(3) 		251

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 476
1 2 3 4 5 6 range
A 604.3
(-2.7)
P 		707.6
(-1.1)
P 		977.3
(3)
P 		697.8
(-1.2)
P 		621.4
(-2.4)
P 		582.5
(-3)
P 		395
B 880.7
(0.9)
P 		713.5
(-1.8)
P 		1012.6
(3)
P 		829.2
(0.1)
P 		637.7
(-3)
P 		645.8
(-2.9)
P 		375
C 778.9
(-1.2)
P 		676
(-2.8)
P 		1058.4
(3)
P 		698.2
(-2.5)
P 		732.3
(-2)
P 		663.2
(-3)
P 		395
avr 754.6
(-1.1) 		699
(-1.9) 		1016.1
(3) 		741.7
(-1.3) 		663.8
(-2.5) 		630.5
(-3) 		386
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 251.5
(3)
P 		117
(-2.8)
P 		129.3
(-2.2)
P 		111.5
(-3)
P 		140
B 174
(3)
P 		131.9
(-1.9)
P 		122.1
(-3)
P 		171.6
(2.7)
P 		52
C 208.7
(3)
P 		167.6
(-0.3)
P 		203.7
(2.6)
P 		133.6
(-3)
P 		75
avr 211.4
(3) 		138.8
(-3) 		151.7
(-1.9) 		138.9
(-3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 195
1 2 3 4 5 6 range
A 111.4
(-3)
P 		251.7
(3)
P 		212.8
(1.3)
P 		177
(-0.2)
P 		187.5
(0.3)
P 		141.8
(-1.7)
P 		140
B 306.4
(3)
P 		237.5
(-1.8)
P 		245.9
(-1.2)
P 		219.6
(-3)
P 		259.1
(-0.3)
P 		240.8
(-1.5)
P 		87
C 288.7
(3)
P 		206.3
(-0.3)
P 		269.4
(2.2)
P 		140.4
(-3)
P 		237
(0.9)
P 		222
(0.3)
P 		148
avr 235.5
(2.3) 		231.8
(2) 		242.7
(3) 		179
(-3) 		227.9
(1.6) 		201.5
(-0.9) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187814_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14981
Sequence Type Exemplar sequence
Representative Public ID C37H5.13 NCBI
Target Description C37H5.13 /REP_DB=WormBase Gene ID /WP=CE08636 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:P91145 protein_id:AAB42376.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071900(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071900 NCBI Caenorhabditis elegans C37H5.13a (C37H5.13) mRNA, complete cds. 11/11 None
SNAP00000016591 ENSEMBL cdna:SNAP chromosome:CEL140:V:4857103:4860281:-1 11/11 None
GENEFINDER00000016602 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4857103:4860338:-1 11/11 None
C37H5.13a ENSEMBL cdna:known chromosome:CEL140:V:4857022:4862545:-1 gene:C37H5.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178878 2 1 NM_071900 187814_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4857102-4862545(-) 100.0 100.0
Public Domain and Genome References
Ensembl C37H5.13
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68237 Hypothetical protein C37H5.13a [Caenorhabditis elegans] ref|NP_504301.1| C37H5.13a [Caenorhabditis elegans] 0.0
blast T25623 hypothetical protein C37H5.13 - Caenorhabditis elegans 0.0
blast CAE64208 Hypothetical protein CBG08841 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003703 EMBL-EBI Acyl-CoA thioesterase 1.3E-21
Pfam IPR003703 EMBL-EBI Acyl-CoA thioesterase 6.1E-21
Pfam IPR003703 EMBL-EBI Acyl-CoA thioesterase 1.3E-21
Pfam IPR003703 EMBL-EBI Acyl-CoA thioesterase 6.1E-21
Pfam IPR003703 EMBL-EBI Acyl-CoA thioesterase 1.3E-21
Pfam IPR003703 EMBL-EBI Acyl-CoA thioesterase 6.1E-21
Sequence
Target Sequence 
>C. ELEGANS:187814_S_AT
cagaagcggattccattgtccaccagttgccaatgcccgaggttccggctccagatagtc
tcgaggatctttcggacacttttgagagaatcaagaagaatgctaacattcctccagctg
cacttgcgatgattggattcaagcaaaaggaaattccacccgcattcttcagaatctttt
cgttccgcccagtcgacattgactcatacctttgtctgaaaaaagacgatcatacggctg
gacatggccatccaactgatgcctaccgatcgtacgtctggattaaagcaaacgagaaca
ttggggatgatccacgacttcacttggctgctgctgcatacatttcggatgcaacgatga
ttgaaactgcattgagacctcattcgaaacgcggcttcatcccatcaatggctctcactc
ttgaccactcgatttggatgcacactgacaacttccgtgtcgacgactggatgctctatg
agaatcactcaacgattgccggtggcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGAAGCGGATTCCATTGTCCACCA 380 203 680 Antisense
TTCCGGCTCCAGATAGTCTCGAGGA 7 701 722 Antisense
GAGGATCTTTCGGACACTTTTGAGA 665 403 742 Antisense
AGAATGCTAACATTCCTCCAGCTGC 541 75 776 Antisense
CCTCCAGCTGCACTTGCGATGATTG 175 265 790 Antisense
CCGCCCAGTCGACATTGACTCATAC 433 261 864 Antisense
ACATGGCCATCCAACTGATGCCTAC 429 107 921 Antisense
CCTACCGATCGTACGTCTGGATTAA 690 265 941 Antisense
TGGCTGCTGCTGCATACATTTCGGA 409 545 1004 Antisense
CTCACTCTTGACCACTCGATTTGGA 622 227 1093 Antisense
TCACTCAACGATTGCCGGTGGCGGA 301 623 1164 Antisense
Sequence Source Affymetrix Proprietary Database