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[187812_s_at] nuclear homone receptor

Description C32F10.7 /REP_DB=WormBase Gene ID /WP=CE08544 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O01684 protein_id:AAC24269.1
Cluster 6grp_total > 76      4grp_total > 34      6grp_cgc > 48      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 3.7
(-3)
A 		7.7
(1.7)
A 		8.8
(3)
A 		4.9
(-1.6)
A 		5
B 3.4
(-3)
A 		10.2
(1.7)
A 		8
(0.2)
A 		12.1
(3)
A 		9
C 4.2
(-2.9)
A 		9.6
(3)
A 		4.1
(-3)
A 		8.8
(2.1)
A 		6
avr 3.8
(-3) 		9.2
(3) 		7
(0.6) 		8.6
(2.3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 9.2
(-2.5)
A 		3
(-3)
A 		6.7
(-2.7)
A 		33.1
(-0.6)
A 		25.8
(-1.2)
A 		78.7
(3)
P 		76
B 3.6
(-3)
A 		21.1
(-1.7)
A 		7.2
(-2.7)
A 		32.3
(-0.9)
A 		6.3
(-2.8)
A 		86.3
(3)
A 		83
C 3.1
(-3)
A 		17.6
(-2.1)
A 		21.2
(-1.8)
A 		9.2
(-2.6)
A 		43.8
(-0.4)
A 		95.4
(3)
P 		92
avr 5.3
(-3) 		13.9
(-2.4) 		11.7
(-2.5) 		24.9
(-1.6) 		25.3
(-1.5) 		86.8
(3) 		82
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.4
(-0.4)
A 		1.7
(0.8)
A 		2.3
(3)
A 		0.7
(-3)
A 		2
B 1.1
(-3)
A 		2.5
(2.6)
A 		1.9
(0.2)
A 		2.6
(3)
A 		2
C 1.4
(-3)
A 		2.8
(3)
A 		1.4
(-3)
A 		1.5
(-2.6)
A 		1
avr 1.3
(-3) 		2.3
(3) 		1.9
(0.6) 		1.6
(-1.2) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 1.7
(-2.8)
A 		1.1
(-3)
A 		1.5
(-2.9)
A 		8.4
(-0.6)
A 		7.8
(-0.8)
A 		19.2
(3)
P 		18
B 1.3
(-3)
A 		7
(-1.9)
A 		1.8
(-2.9)
A 		8.5
(-1.6)
A 		2.6
(-2.7)
A 		32.2
(3)
A 		31
C 1.1
(-3)
A 		5.4
(-2.2)
A 		5.4
(-2.2)
A 		1.9
(-2.8)
A 		14.2
(-0.4)
A 		31.9
(3)
P 		31
avr 1.4
(-3) 		4.5
(-2.3) 		2.9
(-2.7) 		6.3
(-1.9) 		8.2
(-1.5) 		27.8
(3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187812_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2319
Sequence Type Exemplar sequence
Representative Public ID C32F10.7 NCBI
Target Description C32F10.7 /REP_DB=WormBase Gene ID /WP=CE08544 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O01684 protein_id:AAC24269.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059288(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059288 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-2) (nhr-2) mRNA, complete cds. 11/11 A 
GENEFINDER00000021240 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5826941:5829530:-1 11/11 None
SNAP00000021237 ENSEMBL cdna:SNAP chromosome:CEL140:I:5827008:5829244:-1 11/11 None
C32F10.6 ENSEMBL cdna:known chromosome:CEL140:I:5826610:5829250:-1 gene:C32F10.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5828760-5829530(-) 100.0 100.0
Public Domain and Genome References
Gene Title nuclear homone receptor
Gene Symbol nhr-2
Ensembl C32F10.6
Entrez Gene 172251 Entrez gene
WormBase CE39002 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK17972 nuclear receptor NHR-2 [Caenorhabditis elegans] 0.0
blast AAC24271 Nuclear hormone receptor family protein 2 [Caenorhabditis elegans] ref|NP_491689.3| Nuclear Hormone Receptor family member (nhr-2) [Caenorhabditis elegans] gb|AAA80355.1| NHR-2 [Caenorhabditis elegans] sp|Q10902|NHR2_CAEEL Nuclear hormone receptor family member nhr-2 0.0
blast T34026 nuclear hormone receptor nhr-2 - Caenorhabditis elegans 0.0
blast AAK17971 nuclear receptor NHR-2 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.8E-37
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.8E-37
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.8E-37
Sequence
Target Sequence 
>C. ELEGANS:187812_S_AT
gatgcattatccaaatcaaccacatatgatgccaggctatccaatgataaatgcatatca
acagtcatatttacagaatccggcacaatggaccccagaaatgcttctgtgtatgcaaat
gcaaatgcagcaaatggttccaggaacagcaacaaactcaacctacatgccaccacaatc
taaaaatacagtcactccaaatgccacatcaccgctgagccagatttcggacagagattc
gggaaatgacacaatctctccaccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCATTATCCAAATCAACCACAT 24 413 261 Antisense
AACCACATATGATGCCAGGCTATCC 375 147 278 Antisense
CAGTCATATTTACAGAATCCGGCAC 2 209 322 Antisense
TGGACCCCAGAAATGCTTCTGTGTA 157 549 349 Antisense
GCAAATGCAGCAAATGGTTCCAGGA 340 317 381 Antisense
GCAACAAACTCAACCTACATGCCAC 360 319 409 Antisense
CCTACATGCCACCACAATCTAAAAA 47 269 422 Antisense
AATACAGTCACTCCAAATGCCACAT 658 171 445 Antisense
ACATCACCGCTGAGCCAGATTTCGG 632 105 466 Antisense
GCCAGATTTCGGACAGAGATTCGGG 147 281 479 Antisense
GGAAATGACACAATCTCTCCACCAC 549 527 502 Antisense
Sequence Source Affymetrix Proprietary Database