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[187811_at]

Description C32F10.7 /REP_DB=WormBase Gene ID /WP=CE08544 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O01684 protein_id:AAC24269.1
Cluster 6grp_total > 53      4grp_total > 0      6grp_cgc > 90      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 3.4
(-3)
A 		10.7
(-2.1)
A 		49.6
(2.4)
A 		54.5
(3)
A 		51
B 18.9
(-0.9)
A 		3.9
(-3)
A 		29
(0.5)
A 		46.8
(3)
A 		43
C 5.1
(-2.8)
A 		5.8
(-2.7)
A 		3.3
(-3)
A 		47.5
(3)
A 		44
avr 9.1
(-2.7) 		6.8
(-3) 		27.3
(-0.1) 		49.6
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 8.8
(-0.7)
A 		2.8
(-2.9)
A 		6.6
(-1.5)
A 		2.6
(-3)
A 		18.8
(3)
A 		7.8
(-1.1)
A 		16
B 9.4
(-1.6)
A 		17.1
(-0.2)
A 		35.3
(3)
A 		2.9
(-2.7)
A 		20
(0.3)
A 		1.2
(-3)
A 		34
C 14.1
(0.9)
A 		18
(2)
A 		9.7
(-0.5)
A 		20.6
(2.8)
A 		1.3
(-3)
A 		21.2
(3)
A 		20
avr 10.8
(-1.5) 		12.6
(-0.2) 		17.2
(3) 		8.7
(-3) 		13.4
(0.3) 		10.1
(-2) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.2
(-3)
A 		2.3
(-2.4)
A 		13
(3)
A 		8
(0.5)
A 		12
B 6
(0.3)
A 		1
(-3)
A 		6.7
(0.8)
A 		10
(3)
A 		9
C 1.7
(-2.5)
A 		1.7
(-2.5)
A 		1.1
(-3)
A 		8
(3)
A 		7
avr 3
(-1.9) 		1.7
(-3) 		6.9
(1.5) 		8.7
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.6
(-1.9)
A 		1
(-2.6)
A 		1.4
(-2.2)
A 		0.7
(-3)
A 		5.7
(3)
A 		1.9
(-1.6)
A 		5
B 3.3
(-0.9)
A 		5.7
(0.9)
A 		8.6
(3)
A 		0.8
(-2.8)
A 		8.1
(2.6)
A 		0.5
(-3)
A 		8
C 5.2
(1.3)
A 		5.5
(1.6)
A 		2.5
(-1.1)
A 		4.1
(0.3)
A 		0.4
(-3)
A 		7.1
(3)
A 		7
avr 3.4
(0.2) 		4.1
(1.7) 		4.2
(1.9) 		1.9
(-3) 		4.7
(3) 		3.2
(-0.2) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187811_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2319
Sequence Type Exemplar sequence
Representative Public ID C32F10.7 NCBI
Target Description C32F10.7 /REP_DB=WormBase Gene ID /WP=CE08544 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O01684 protein_id:AAC24269.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059288
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000021240 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5826941:5829530:-1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5828760-5829530(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK17972 nuclear receptor NHR-2 [Caenorhabditis elegans] 0.0
blast T34026 nuclear hormone receptor nhr-2 - Caenorhabditis elegans 0.0
blast AAK17971 nuclear receptor NHR-2 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.8E-37
Sequence
Target Sequence 
>C. ELEGANS:187811_AT
ttcccatagaccaccaggggcggagcagcacaccgtcgttgcaggcagaacgagcaagag
tgcgcgagaacagtgtgtgcaaggtcagatggtcattatgcaaccaattcgagcgttcgt
tgaccaacattttcgcgcgttctgtcagtctgttgaattgtacactatttcatattttca
gatggttccaatgaatccagaattgatgcattatccaaatcaaccacatatgatgccagg
ctatccaatgataaatgcatatcaacagtcatatttacagaatccggcacaatggacccc
agaaatgcttctgtgtatgcaaatgcaaatgcagcaaatggttccaggaacagcaacaaa
ctcaacctacatgccaccacaatctaaaaatacagtcactccaaatgccacatcaccgct
gagccagatttcggacagagattcgggaaatgacacaatctctccaccactcacttcaca
gaacaggtatgtatttcttctgcgcggtaaaaagaagagttgcgcaatgtttgagtgttt
gggcggtctctac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCCATAGACCACCAGGGGCGGAG 130 611 57 Antisense
CACACCGTCGTTGCAGGCAGAACGA 514 195 85 Antisense
GGCAGAACGAGCAAGAGTGCGCGAG 1 535 100 Antisense
GAGTGCGCGAGAACAGTGTGTGCAA 241 401 114 Antisense
GTGTGTGCAAGGTCAGATGGTCATT 186 489 129 Antisense
GGTCATTATGCAACCAATTCGAGCG 658 503 147 Antisense
AACCAATTCGAGCGTTCGTTGACCA 669 133 158 Antisense
TTCGTTGACCAACATTTTCGCGCGT 7 661 172 Antisense
GCGCGTTCTGTCAGTCTGTTGAATT 419 287 191 Antisense
CAGGTATGTATTTCTTCTGCGCGGT 313 209 540 Antisense
GTTTGAGTGTTTGGGCGGTCTCTAC 551 451 585 Antisense
Sequence Source Affymetrix Proprietary Database