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[187809_at]

Description W08A12.1 /REP_DB=WormBase Gene ID /WP=CE14696 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O01619 protein_id:AAB52320.1
Cluster 6grp_total > 39      4grp_total > 21      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 406
1 2 3 4 range
A 473.7
(2)
A 		330.3
(-0.3)
A 		165
(-3)
A 		534.8
(3)
P 		370
B 434.7
(0.8)
A 		193.8
(-3)
A 		225
(-2.5)
A 		570.9
(3)
P 		377
C 293.7
(-3)
A 		338.4
(0.7)
A 		324.7
(-0.4)
A 		365.4
(3)
A 		72
avr 400.7
(0.9) 		287.5
(-1.8) 		238.2
(-3) 		490.4
(3) 		252

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 716
1 2 3 4 5 6 range
A 395
(-0.7)
A 		462.3
(0.2)
A 		225.8
(-2.8)
A 		213.2
(-3)
A 		421.5
(-0.3)
A 		679.3
(3)
P 		466
B 297.8
(0.5)
A 		247
(-0.8)
A 		162.4
(-3)
A 		183.8
(-2.5)
A 		372.9
(2.4)
A 		396.4
(3)
P 		234
C 878.4
(3)
P 		313.3
(-1.8)
A 		253.4
(-2.3)
A 		172
(-3)
A 		591.5
(0.6)
P 		326.3
(-1.7)
P 		706
avr 523.7
(3) 		340.9
(-0.3) 		213.9
(-2.6) 		189.7
(-3) 		462
(1.9) 		467.3
(2) 		334
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 172.5
(3)
A 		71.7
(-1.7)
A 		43.1
(-3)
A 		78.3
(-1.4)
P 		129
B 138.6
(3)
A 		47.9
(-3)
A 		52.1
(-2.7)
A 		121.7
(1.9)
P 		91
C 97.2
(1.1)
A 		97.3
(1.2)
A 		113.2
(3)
A 		61.6
(-3)
A 		52
avr 136.1
(3) 		72.3
(-2.7) 		69.5
(-3) 		87.2
(-1.4) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 291
1 2 3 4 5 6 range
A 72.8
(-1.8)
A 		164.4
(2.9)
A 		49.2
(-3)
A 		54.1
(-2.7)
A 		127.2
(1)
A 		165.4
(3)
P 		116
B 103.6
(0.4)
A 		82.2
(-0.7)
A 		39.4
(-3)
A 		48.7
(-2.5)
A 		151.5
(3)
A 		147.8
(2.8)
P 		112
C 325.6
(3)
P 		95.6
(-1.7)
A 		64.5
(-2.4)
A 		34.6
(-3)
A 		191.4
(0.2)
P 		109.2
(-1.5)
P 		291
avr 167.3
(3) 		114.1
(0.4) 		51
(-2.7) 		45.8
(-3) 		156.7
(2.5) 		140.8
(1.7) 		122
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187809_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15210
Sequence Type Exemplar sequence
Representative Public ID W08A12.1 NCBI
Target Description W08A12.1 /REP_DB=WormBase Gene ID /WP=CE14696 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O01619 protein_id:AAB52320.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071628(11), NM_171443(11), NM_071629(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071628 NCBI Caenorhabditis elegans W08A12.1b (W08A12.1) mRNA, complete cds. 11/11 None
NM_171443 NCBI Caenorhabditis elegans W08A12.1c (W08A12.1) mRNA, complete cds. 11/11 None
NM_071629 NCBI Caenorhabditis elegans W08A12.1a (W08A12.1) mRNA, complete cds. 11/11 None
GENEFINDER00000004997 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3695787:3701156:1 11/11 None
W08A12.1b ENSEMBL cdna:known chromosome:CEL140:V:3686936:3701156:1 gene:W08A12.1 11/11 None
W08A12.1c ENSEMBL cdna:known chromosome:CEL140:V:3690321:3701583:1 gene:W08A12.1 11/11 None
W08A12.1a ENSEMBL cdna:known chromosome:CEL140:V:3691782:3701156:1 gene:W08A12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3695786-3701156(+) 100.0 100.0
Public Domain and Genome References
Ensembl W08A12.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK73903 Hypothetical protein W08A12.1b [Caenorhabditis elegans] ref|NP_504029.1| W08A12.1b [Caenorhabditis elegans] 0.0
blast AAL65798 Hypothetical protein W08A12.1c [Caenorhabditis elegans] ref|NP_741519.1| W08A12.1c [Caenorhabditis elegans] 0.0
blast CAE62553 Hypothetical protein CBG06663 [Caenorhabditis briggsae] 0.0
blast AAL65797 Hypothetical protein W08A12.1a [Caenorhabditis elegans] ref|NP_504030.2| W08A12.1a [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:187809_AT
actggaatccgctcaggagaccgtctggccaaagattcaaagaaaagaaaatggctggtg
tcagctgtcgactggaaaaatttcggcaaattcgaggaattcgacattgagcacttctac
ttgctctccgacgagtcgaatattcaacatcgattccgtcgccgtactcagaataatcga
tctacctacacactaacgtcacgggaatactttaaagaatcgaaagattcgattgaaaca
cgaatgaatgtgctctctcgggactataacacgtacgcgaatatgcgggataagagccgt
gcgtcgatctacaaaaagcggcggtgcttcatgtatgggaatatgtactttaatatggac
atctacagtgatcctctcccgccacaggccaacggaaatcatttgatcttcctggagacg
tatacgacggttgtcaagggaacaccactgcccgaaggatcgatgccgccgtttttgact
attgagaaggaaatcaccggtgacagtcaatactcgatgtactcgctctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTGGAATCCGCTCAGGAGACCGTC 371 97 877 Antisense
GGAGACCGTCTGGCCAAAGATTCAA 80 519 892 Antisense
GCTGGTGTCAGCTGTCGACTGGAAA 107 295 930 Antisense
AATTCGACATTGAGCACTTCTACTT 579 177 974 Antisense
TTCCGTCGCCGTACTCAGAATAATC 660 697 1030 Antisense
ATAATCGATCTACCTACACACTAAC 137 25 1049 Antisense
AATGTGCTCTCTCGGGACTATAACA 696 163 1123 Antisense
GAGCCGTGCGTCGATCTACAAAAAG 638 385 1170 Antisense
ATGGACATCTACAGTGATCCTCTCC 161 53 1231 Antisense
TGTCAAGGGAACACCACTGCCCGAA 23 555 1308 Antisense
GTCAATACTCGATGTACTCGCTCTC 569 463 1382 Antisense
Sequence Source Affymetrix Proprietary Database