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[187808_s_at]

Description F42A10.2 /REP_DB=WormBase Gene ID /WP=CE01293 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q20307 protein_id:AAA19073.1
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 06      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 50      6grp_total > 07      4grp_total > 54      6grp_highest_sub > De      6grp_cgc > 20      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 446
1 2 3 4 range
A 654.9
(3)
P 		478.4
(0.2)
P 		280.4
(-3)
P 		288.4
(-2.9)
P 		375
B 659.5
(3)
P 		431.9
(-0.2)
P 		307.9
(-1.9)
P 		228.4
(-3)
P 		431
C 674
(3)
P 		336.8
(-2.3)
P 		415
(-1)
P 		290.2
(-3)
P 		384
avr 662.8
(3) 		415.7
(-0.8) 		334.4
(-2) 		269
(-3) 		394

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 558
1 2 3 4 5 6 range
A 783.3
(3)
P 		498.5
(-1.1)
P 		418.6
(-2.2)
P 		465.9
(-1.5)
P 		363.1
(-3)
P 		396.4
(-2.5)
P 		420
B 545.1
(3)
P 		504.2
(1.9)
P 		457.2
(0.6)
P 		511
(2.1)
P 		359
(-2.1)
P 		325.9
(-3)
P 		219
C 724.3
(3)
P 		521.1
(0.6)
P 		527.1
(0.6)
P 		406.3
(-0.8)
P 		225
(-3)
P 		354.3
(-1.4)
P 		499
avr 684.2
(3) 		507.9
(0.1) 		467.6
(-0.5) 		461.1
(-0.6) 		315.7
(-3) 		358.9
(-2.3) 		369
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 238.5
(3)
P 		103.8
(-1.1)
P 		73.3
(-2)
P 		42.2
(-3)
P 		196
B 210.3
(3)
P 		106.7
(-0.8)
P 		71.3
(-2.2)
P 		48.7
(-3)
P 		162
C 223.1
(3)
P 		96.8
(-1.4)
P 		144.6
(0.3)
P 		48.9
(-3)
P 		174
avr 224
(3) 		102.4
(-1.1) 		96.4
(-1.3) 		46.6
(-3) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 144.4
(0.7)
P 		177.3
(3)
P 		91.2
(-3)
P 		118.2
(-1.1)
P 		109.6
(-1.7)
P 		96.5
(-2.6)
P 		86
B 189.7
(3)
P 		167.8
(1.3)
P 		111
(-3)
P 		135.3
(-1.1)
P 		145.8
(-0.3)
P 		121.5
(-2.2)
P 		79
C 268.5
(3)
P 		159
(-0.4)
P 		134.1
(-1.1)
P 		81.7
(-2.7)
P 		72.8
(-3)
P 		118.6
(-1.6)
P 		196
avr 200.9
(3) 		168
(0.8) 		112.1
(-2.8) 		111.7
(-2.8) 		109.4
(-3) 		112.2
(-2.8) 		92
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187808_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7283
Sequence Type Exemplar sequence
Representative Public ID F42A10.2 NCBI
Target Description F42A10.2 /REP_DB=WormBase Gene ID /WP=CE01293 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q20307 protein_id:AAA19073.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027400(11), NM_065934(11), NM_065935(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027400 NCBI Caenorhabditis elegans NeuroFibroMatosis homolog family member (nfm-1) (nfm-1) mRNA, complete cds. 11/11 None
NM_065934 NCBI Caenorhabditis elegans NeuroFibroMatosis homolog family member (nfm-1) (nfm-1) mRNA, complete cds. 11/11 None
NM_065935 NCBI Caenorhabditis elegans NeuroFibroMatosis homolog family member (nfm-1) (nfm-1) mRNA, complete cds. 11/11 None
SNAP00000011644 ENSEMBL cdna:SNAP chromosome:CEL140:III:6159819:6164283:1 11/11 None
GENEFINDER00000011660 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6159819:6164283:1 11/11 None
F42A10.2c ENSEMBL cdna:known chromosome:CEL140:III:6159782:6163566:1 gene:F42A10.2 11/11 None
F42A10.2a ENSEMBL cdna:known chromosome:CEL140:III:6159819:6164513:1 gene:F42A10.2 11/11 None
F42A10.2b ENSEMBL cdna:known chromosome:CEL140:III:6159819:6164455:1 gene:F42A10.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6159817-6164282(+) 100.0 100.0
Public Domain and Genome References
Ensembl F42A10.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAW30666 Neurofibromatosis homolog protein 1, isoform c [Caenorhabditis elegans] ref|NP_001022571.1| NeuroFibroMatosis homolog family member (nfm-1) [Caenorhabditis elegans] 0.0
blast AAA19073 Neurofibromatosis homolog protein 1, isoform a [Caenorhabditis elegans] ref|NP_498335.1| NeuroFibroMatosis homolog family member (nfm-1) [Caenorhabditis elegans] 0.0
blast AAK68385 Neurofibromatosis homolog protein 1, isoform b [Caenorhabditis elegans] ref|NP_498336.1| NeuroFibroMatosis homolog family member (nfm-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000299 EMBL-EBI Band 4.1 3.9E-73
Pfam IPR000798 EMBL-EBI Ezrin/radixin/moesin ERM 1.1E-42
Sequence
Target Sequence 
>C. ELEGANS:187808_S_AT
gtattcgagtcagtctgcgttgattattgatccgaattggcatcaacaagtatctggtca
tcaatcaggtcatcctggtatgccatcaacaggatcatttcatcaactgcaatcacttga
cacacacactcatcctcaacaaatgatgtctcgaagtctgaatatgccatcatctgcatt
ttcctccccaattccttcaaatcaaccactttctcatcaacaaccacaacaaatgtctca
aaatactcaagctcatcaacaacaaactcaagttcaaaatcagaatcaaccgccatatta
cggaggatctggtatgattattccaccacccgatccttcaattagtcagattttcgagca
acagactactctgatggagttggaaaaatcaaggtcagaatacgaaacacgagcgcgaat
cttcaaggagcacctggaagaattacgtggcgatattgacggcctgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATTCGAGTCAGTCTGCGTTGATT 363 453 1359 Antisense
ATCTGGTCATCAATCAGGTCATCCT 295 33 1410 Antisense
AGGTCATCCTGGTATGCCATCAACA 533 55 1425 Antisense
GGATCATTTCATCAACTGCAATCAC 70 513 1450 Antisense
GAAGTCTGAATATGCCATCATCTGC 484 335 1511 Antisense
TCAAATCAACCACTTTCTCATCAAC 426 629 1555 Antisense
AATCAGAATCAACCGCCATATTACG 114 171 1636 Antisense
TGGTATGATTATTCCACCACCCGAT 67 553 1668 Antisense
CACCCGATCCTTCAATTAGTCAGAT 243 199 1685 Antisense
GAAACACGAGCGCGAATCTTCAAGG 655 355 1762 Antisense
TACGTGGCGATATTGACGGCCTGAA 358 643 1802 Antisense
Sequence Source Affymetrix Proprietary Database