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[187807_at]

Description C17H11.6 /REP_DB=WormBase Gene ID /WP=CE08294 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:P91067 protein_id:AAB37987.1
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 15      4grp_highest_8_8 > 60      4grp_high_8_8 > 25      6grp_highest_nonorm > 61      6grp_total > 04      4grp_total > 39      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 263
1 2 3 4 range
A 576.9
(3)
P 		342.4
(-3)
P 		381.1
(-2)
P 		435.6
(-0.6)
P 		235
B 556.7
(3)
P 		387.6
(-2.8)
P 		381.1
(-3)
P 		492.2
(0.8)
P 		176
C 504.8
(3)
P 		469.4
(1.9)
P 		313.5
(-3)
P 		375.3
(-1.1)
P 		191
avr 546.1
(3) 		399.8
(-1.7) 		358.6
(-3) 		434.4
(-0.6) 		188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 260
1 2 3 4 5 6 range
A 613.1
(3)
P 		555.6
(1.7)
P 		356.6
(-3)
P 		494.7
(0.2)
P 		472.7
(-0.3)
P 		396.7
(-2.1)
P 		257
B 541.4
(3)
P 		507.2
(1.9)
P 		353.4
(-3)
P 		444.1
(-0.1)
P 		382.4
(-2.1)
P 		385.4
(-2)
P 		188
C 529.7
(3)
P 		526.3
(2.9)
P 		408.4
(-1.2)
P 		405.6
(-1.3)
P 		458.4
(0.5)
P 		357.1
(-3)
P 		173
avr 561.4
(3) 		529.7
(2) 		372.8
(-3) 		448.1
(-0.6) 		437.8
(-0.9) 		379.7
(-2.8) 		189
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 210
(3)
P 		74.3
(-2.6)
P 		99.6
(-1.5)
P 		63.8
(-3)
P 		146
B 177.5
(3)
P 		95.7
(-2.5)
P 		88.3
(-3)
P 		104.9
(-1.9)
P 		89
C 167.1
(3)
P 		135
(1.1)
P 		109.3
(-0.3)
P 		63.3
(-3)
P 		104
avr 184.9
(3) 		101.7
(-1.6) 		99.1
(-1.8) 		77.3
(-3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 113
(-1.2)
P 		197.6
(3)
P 		77.7
(-3)
P 		125.5
(-0.6)
P 		142.6
(0.2)
P 		96.6
(-2.1)
P 		120
B 188.4
(3)
P 		168.8
(1.9)
P 		85.8
(-3)
P 		117.6
(-1.1)
P 		155.4
(1.1)
P 		143.7
(0.4)
P 		103
C 196.3
(3)
P 		160.6
(1.1)
P 		103.9
(-1.8)
P 		81.6
(-3)
P 		148.3
(0.5)
P 		119.5
(-1)
P 		115
avr 165.9
(2.3) 		175.7
(3) 		89.1
(-3) 		108.2
(-1.7) 		148.8
(1.1) 		119.9
(-0.9) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187807_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16595
Sequence Type Exemplar sequence
Representative Public ID C17H11.6 NCBI
Target Description C17H11.6 /REP_DB=WormBase Gene ID /WP=CE08294 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:P91067 protein_id:AAB37987.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029245(11), NM_076981(11), NM_076982(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029245 NCBI Caenorhabditis elegans C17H11.6c (C17H11.6) mRNA, complete cds. 11/11 None
NM_076981 NCBI Caenorhabditis elegans C17H11.6b (C17H11.6) mRNA, complete cds. 11/11 None
NM_076982 NCBI Caenorhabditis elegans C17H11.6a (C17H11.6) mRNA, complete cds. 11/11 None
GENEFINDER00000009235 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8185576:8194701:-1 10/11 None
C17H11.6c.1 ENSEMBL cdna:known chromosome:CEL140:X:8185119:8203723:-1 gene:C17H11.6 11/11 A 
C17H11.6b ENSEMBL cdna:known chromosome:CEL140:X:8185191:8194652:-1 gene:C17H11.6 11/11 A 
C17H11.6a ENSEMBL cdna:known chromosome:CEL140:X:8185485:8194652:-1 gene:C17H11.6 11/11 None
C17H11.6c.3 ENSEMBL cdna:known chromosome:CEL140:X:8185576:8194701:-1 gene:C17H11.6 10/11 None
C17H11.6c.2 ENSEMBL cdna:known chromosome:CEL140:X:8185576:8194703:-1 gene:C17H11.6 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009212 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8185483-8193211(-) 100.0 100.0
Public Domain and Genome References
Ensembl C17H11.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO91744 Hypothetical protein C17H11.6c [Caenorhabditis elegans] ref|NP_001024416.1| C17H11.6c [Caenorhabditis elegans] 0.0
blast AAK68189 Hypothetical protein C17H11.6a [Caenorhabditis elegans] ref|NP_509383.1| C17H11.6a [Caenorhabditis elegans] 0.0
blast AAK68190 Hypothetical protein C17H11.6b [Caenorhabditis elegans] ref|NP_509382.1| C17H11.6b [Caenorhabditis elegans] 0.0
blast T25555 hypothetical protein C17H11.6 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 5.8E-9
Pfam IPR002867 EMBL-EBI Zn-finger, cysteine-rich C6HC 1.7E-21
Pfam IPR001841 EMBL-EBI Zn-finger, RING 5.8E-9
Pfam IPR002867 EMBL-EBI Zn-finger, cysteine-rich C6HC 1.7E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024416.1 2 330-352,372-394
NP_509382.1 2 330-352,372-394
NP_509383.1 2 330-352,372-394
C17H11.6c.1 2 330-352,372-394
C17H11.6b 2 330-352,372-394
C17H11.6a 2 330-352,372-394
C17H11.6c.3 2 330-352,372-394
C17H11.6c.2 2 330-352,372-394
GENEFINDER00000009235 2 347-369,389-411
Sequence
Target Sequence 
>C. ELEGANS:187807_AT
ttgagcgcgacgacgatgggcttcttttcaccgaagaaggtgctgcgttgctgatcaatt
caccacctgcaatgcgcagctctggaagtgtgaatatcgatcccatcgatttattcaaaa
ttcgtagctggcttgataatatgaagcaaatggtagccactgacgcacctcaagagacac
cttatgaaccttcaacgcgaccaagtagcaagctccgaagatcaggaagcgggaagagtg
tgcatacagtagccacgttcccagtcaacctcaacaccggtaacacggtgaacaggcagg
gactctcgaatttgtcgaaaccagaaattgttcaaaatatgagcaacgctccttcggagg
ctggaattactgtcgccgcgccacgtagcccgacagaacttgaggcgaacgaagtcagaa
aaaaaagaagcgacgttttggaatattcagtaattggttcaacaaaacgaaataataaca
tcgcgttcttttttttcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGAGCGCGACGACGATGGGCTTCT 525 701 1898 Antisense
AAGGTGCTGCGTTGCTGATCAATTC 124 161 1934 Antisense
CCACCTGCAATGCGCAGCTCTGGAA 96 275 1960 Antisense
GCAAATGGTAGCCACTGACGCACCT 22 317 2043 Antisense
GACGCACCTCAAGAGACACCTTATG 115 381 2059 Antisense
TGAACCTTCAACGCGACCAAGTAGC 225 573 2082 Antisense
GTGTGCATACAGTAGCCACGTTCCC 511 483 2135 Antisense
GAACAGGCAGGGACTCTCGAATTTG 468 351 2187 Antisense
GGAGGCTGGAATTACTGTCGCCGCG 141 513 2253 Antisense
CCACGTAGCCCGACAGAACTTGAGG 579 273 2278 Antisense
TAACATCGCGTTCTTTTTTTTCATT 344 639 2373 Antisense
Sequence Source Affymetrix Proprietary Database