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[187804_s_at]

Description F45E4.10 /REP_DB=WormBase Gene ID /WP=CE17073 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q94235 protein_id:AAB09141.1
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 84      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 64      6grp_total > 75      4grp_total > 39      6grp_cgc > 66      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 299
1 2 3 4 range
A 664.6
(3)
P 		400.4
(-3)
P 		409.5
(-2.8)
P 		496.3
(-0.8)
P 		264
B 621.9
(3)
P 		500.4
(-2.1)
P 		479.6
(-3)
P 		512.9
(-1.6)
P 		142
C 699.6
(3)
P 		543.8
(-1.1)
P 		471.1
(-3)
P 		500.8
(-2.2)
P 		229
avr 662
(3) 		481.5
(-2.2) 		453.4
(-3) 		503.3
(-1.6) 		209

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 634
1 2 3 4 5 6 range
A 568.1
(-3)
P 		644.4
(-1.7)
P 		829.8
(1.5)
P 		920.6
(3)
P 		805.1
(1)
P 		898.1
(2.6)
P 		353
B 550.3
(-3)
P 		554
(-2.9)
P 		897.1
(2.6)
P 		901
(2.7)
P 		757.7
(0.3)
P 		921.8
(3)
P 		372
C 470.2
(-3)
P 		671.2
(-1.1)
P 		635.7
(-1.4)
P 		964.9
(1.7)
P 		714.2
(-0.7)
P 		1103.9
(3)
P 		634
avr 529.5
(-3) 		623.2
(-1.7) 		787.5
(0.5) 		928.8
(2.4) 		759
(0.1) 		974.6
(3) 		445
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 242
(3)
P 		86.9
(-2.5)
P 		107.1
(-1.8)
P 		72.6
(-3)
P 		169
B 198.3
(3)
P 		123.6
(-2)
P 		111.1
(-2.9)
P 		109.3
(-3)
P 		89
C 231.6
(3)
P 		156.4
(-0.1)
P 		164.2
(0.3)
P 		84.5
(-3)
P 		147
avr 224
(3) 		122.3
(-1.5) 		127.5
(-1.3) 		88.8
(-3) 		135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 265
1 2 3 4 5 6 range
A 104.7
(-3)
P 		229.2
(2.4)
P 		180.7
(0.3)
P 		233.5
(2.6)
P 		242.9
(3)
P 		218.6
(1.9)
P 		138
B 191.5
(-2.7)
P 		184.4
(-3)
P 		217.8
(-1.7)
P 		238.6
(-1)
P 		307.8
(1.6)
P 		343.7
(3)
P 		159
C 174.3
(-2.6)
P 		204.8
(-1.8)
P 		161.8
(-3)
P 		194
(-2.1)
P 		231.1
(-1)
P 		369.5
(3)
P 		208
avr 156.8
(-3) 		206.1
(-1.1) 		186.8
(-1.8) 		222
(-0.5) 		260.6
(1) 		310.6
(3) 		154
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187804_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10346
Sequence Type Exemplar sequence
Representative Public ID F45E4.10 NCBI
Target Description F45E4.10 /REP_DB=WormBase Gene ID /WP=CE17073 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q94235 protein_id:AAB09141.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068845(11), NM_068846(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068845 NCBI Caenorhabditis elegans GEI-4(Four) Interacting protein family member (gfi-4) (gfi-4) mRNA, complete cds. 11/11 None
NM_068846 NCBI Caenorhabditis elegans GEI-4(Four) Interacting protein family member (gfi-4) (gfi-4) mRNA, complete cds. 11/11 None
F45E4.10b.2 ENSEMBL cdna:known chromosome:CEL140:IV:7646184:7654198:-1 gene:F45E4.10 11/11 None
F45E4.10b.1 ENSEMBL cdna:known chromosome:CEL140:IV:7646312:7654198:-1 gene:F45E4.10 11/11 None
F45E4.10a ENSEMBL cdna:known chromosome:CEL140:IV:7646403:7651021:-1 gene:F45E4.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7646408-7651027(-) 100.0 100.0
Public Domain and Genome References
Ensembl F45E4.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM98015 Gei-4(four) interacting protein protein 4, isoform b [Caenorhabditis elegans] ref|NP_501246.2| GEI-4(Four) Interacting protein family member (gfi-4) [Caenorhabditis elegans] 0.0
blast T25761 hypothetical protein F45E4.10 - Caenorhabditis elegans 0.0
blast AAM98014 Gei-4(four) interacting protein protein 4, isoform a [Caenorhabditis elegans] ref|NP_501247.2| GEI-4(Four) Interacting protein family member (gfi-4) [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:187804_S_AT
acctgagcacattgcactgccaatggaaactgctctacaacggactgggaacatggatac
tgtagagcaaattgcaaagtattatacaaaaacggatcggcacgcgagaaaaatgatcga
agaggacgctctgcgttgcattcgttcaattcaaaatcgagcaagagtctgcacagagca
tctacgactttccattattttcatgatgataaaatttgtcgatccattttcgcccaagtt
caggaatattttgcggatgtatctcgatcaggcaatgaatgacaacattcgaagtaagag
attcctatcaaaacaatcgtttgttacgtggtctacagctgttaatgaagcgtttcaaat
tgtgtcccagtggaatggttctttagaagaagccgattttgttccgaaattcctatctga
aactaaaaagtgtggcgctcagatgttttttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCTGAGCACATTGCACTGCCAATG 697 85 1731 Antisense
CACTGCCAATGGAAACTGCTCTACA 68 199 1745 Antisense
ACTGCTCTACAACGGACTGGGAACA 350 95 1759 Antisense
GCTCTGCGTTGCATTCGTTCAATTC 682 299 1858 Antisense
ACAGAGCATCTACGACTTTCCATTA 663 107 1903 Antisense
ATCCATTTTCGCCCAAGTTCAGGAA 311 39 1952 Antisense
TTTGCGGATGTATCTCGATCAGGCA 331 669 1980 Antisense
TGTTACGTGGTCTACAGCTGTTAAT 651 561 2052 Antisense
AGCGTTTCAAATTGTGTCCCAGTGG 446 79 2079 Antisense
GCCGATTTTGTTCCGAAATTCCTAT 482 283 2122 Antisense
AGTGTGGCGCTCAGATGTTTTTTCC 537 59 2159 Antisense
Sequence Source Affymetrix Proprietary Database