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[187803_s_at]

Description Y47D3A.17 /REP_DB=WormBase Gene ID /WP=CE26105 /CHR=3 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q9U2C7 protein_id:CAB57894.2
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 33      4grp_highest_8_8 > 07      4grp_high_8_8 > 20      6grp_highest_nonorm > 81      6grp_total > 02      4grp_total > 19      6grp_highest_sub > 02      6grp_cgc > 52      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 339.8
(0)
P 		344.3
(0.2)
P 		260.5
(-3)
P 		417.9
(3)
P 		157
B 272.7
(-3)
P 		330.5
(1.2)
P 		319
(0.4)
P 		355.4
(3)
P 		83
C 300.6
(-1.7)
P 		334.9
(-0.1)
P 		274.6
(-3)
P 		399.2
(3)
P 		125
avr 304.4
(-1.9) 		336.6
(-0.1) 		284.7
(-3) 		390.8
(3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 318.1
(2.1)
P 		334
(3)
P 		253.1
(-1.3)
P 		255.7
(-1.2)
P 		221.8
(-3)
P 		261.7
(-0.9)
P 		112
B 277.5
(-1.5)
P 		342.3
(2.2)
P 		355.9
(3)
P 		283.6
(-1.2)
P 		319.4
(0.9)
P 		251.4
(-3)
P 		105
C 302.7
(0.6)
P 		330
(2.9)
P 		272.4
(-2)
P 		283.1
(-1.1)
P 		331.7
(3)
P 		260.4
(-3)
P 		71
avr 299.4
(0.2) 		335.4
(3) 		293.8
(-0.2) 		274.1
(-1.7) 		291
(-0.4) 		257.8
(-3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 123.7
(3)
P 		74.7
(-1.7)
P 		68.1
(-2.3)
P 		61.2
(-3)
P 		63
B 87
(3)
P 		81.6
(0.5)
P 		73.9
(-3)
P 		75.7
(-2.2)
P 		13
C 99.5
(3)
P 		96.3
(2.4)
P 		95.7
(2.3)
P 		67.3
(-3)
P 		32
avr 103.4
(3) 		84.2
(-0.3) 		79.2
(-1.1) 		68.1
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 58.6
(-2.7)
P 		118.8
(3)
P 		55.1
(-3)
P 		64.9
(-2.1)
P 		66.9
(-1.9)
P 		63.7
(-2.2)
P 		64
B 96.5
(-0.7)
P 		113.9
(1.3)
P 		86.4
(-1.8)
P 		75.1
(-3)
P 		129.8
(3)
P 		93.8
(-0.9)
P 		55
C 112.2
(3)
P 		100.7
(1.8)
P 		69.3
(-1.7)
P 		56.9
(-3)
P 		107.3
(2.5)
P 		87.2
(0.3)
P 		55
avr 89.1
(0.1) 		111.1
(3) 		70.3
(-2.4) 		65.6
(-3) 		101.3
(1.7) 		81.6
(-0.9) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187803_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7189
Sequence Type Exemplar sequence
Representative Public ID Y47D3A.17 NCBI
Target Description Y47D3A.17 /REP_DB=WormBase Gene ID /WP=CE26105 /CHR=3 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q9U2C7 protein_id:CAB57894.2
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067047(11), NM_067048(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067047 NCBI Caenorhabditis elegans Oxysterol Binding protein (OSBP) Related family member (obr-1) (obr-1) mRNA, complete cds. 11/11 None
NM_067048 NCBI Caenorhabditis elegans Oxysterol Binding protein (OSBP) Related family member (obr-1) (obr-1) mRNA, complete cds. 11/11 None
SNAP00000007214 ENSEMBL cdna:SNAP chromosome:CEL140:III:11257382:11260944:-1 11/11 None
GENEFINDER00000007271 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11257382:11259397:-1 11/11 None
Y47D3A.17a ENSEMBL cdna:known chromosome:CEL140:III:11257196:11270736:-1 gene:Y47D3A.17 11/11 None
Y47D3A.17b.1 ENSEMBL cdna:known chromosome:CEL140:III:11257382:11267340:-1 gene:Y47D3A.17 11/11 None
Y47D3A.17b.2 ENSEMBL cdna:known chromosome:CEL140:III:11257382:11266225:-1 gene:Y47D3A.17 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11257377-11270722(-) 98.48 100.0
Public Domain and Genome References
Ensembl Y47D3A.17
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB57894 Hypothetical protein Y47D3A.17a [Caenorhabditis elegans] ref|NP_499448.1| Oxysterol Binding protein (OSBP) Related family member (obr-1) [Caenorhabditis elegans] 0.0
blast CAE67651 Hypothetical protein CBG13212 [Caenorhabditis briggsae] 0.0
blast CAC42376 Hypothetical protein Y47D3A.17b [Caenorhabditis elegans] ref|NP_499449.1| Oxysterol Binding protein (OSBP) Related family member (obr-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000648 EMBL-EBI Oxysterol-binding protein 3.6E-79
Pfam IPR000648 EMBL-EBI Oxysterol-binding protein 1.6E-54
Pfam IPR000648 EMBL-EBI Oxysterol-binding protein 3.7E-109
Pfam IPR001849 EMBL-EBI Pleckstrin-like 1.4E-21
Pfam IPR000648 EMBL-EBI Oxysterol-binding protein 3.7E-109
Sequence
Target Sequence 
>C. ELEGANS:187803_S_AT
tgctcaaatttgtgccatactcgtattttagtagagaacagccgagaaaggtatacggta
ttgttcgtgacgcggaaggcataccaaaatacgtggttcaaggcacatgggacaaatcga
ttgatatgttgaaagtgtcaagttggaacggaaatcacgagaaaccgaaactcgaagttg
acgagacgagtcttaaacgcatttggactgccaatccgttaccgaaaaacgctgagaaaa
tgcacaatttcacaaaattggcgattgagctcaatgagccggaggagggtgtagctccaa
cggattcacgcctccgacccgatcagcggcttatggaaaatggagagtgggatgaagcga
atcggaagaagctcgagattgaagagaagcagcgtgttgtacggcggcggcgggaagccg
agaaggagttggctatgaaaaaaggggacaaatatgaagagtacgagccaacatggtttg
ttcgtgtccaagatgagtcaaatggagccctaattcatcagtttaaaggcggctactggg
aggcaaaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCAAATTTGTGCCATACTCGTA 6 581 1727 Antisense
GTTCGTGACGCGGAAGGCATACCAA 140 443 1789 Antisense
CGAGACGAGTCTTAAACGCATTTGG 567 249 1908 Antisense
AACGCATTTGGACTGCCAATCCGTT 440 145 1922 Antisense
GAGGGTGTAGCTCCAACGGATTCAC 107 403 2011 Antisense
CCGACCCGATCAGCGGCTTATGGAA 30 263 2040 Antisense
GAGAAGCAGCGTGTTGTACGGCGGC 535 389 2110 Antisense
TACGGCGGCGGCGGGAAGCCGAGAA 616 647 2126 Antisense
GAGCCAACATGGTTTGTTCGTGTCC 431 383 2191 Antisense
AATGGAGCCCTAATTCATCAGTTTA 15 163 2227 Antisense
AAGGCGGCTACTGGGAGGCAAAAGA 297 159 2252 Antisense
Sequence Source Affymetrix Proprietary Database