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[187801_at]

Description F37F2.1 /REP_DB=WormBase Gene ID /WP=CE17802 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O61748 protein_id:AAC16996.1
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 32      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 62      6grp_total > 21      4grp_total > 57      6grp_highest_sub > 02_03      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 813
1 2 3 4 range
A 439.6
(-2.7)
P 		753.1
(0.5)
P 		994.5
(3)
P 		413.8
(-3)
P 		581
B 435.9
(-2.2)
P 		789.6
(1.4)
P 		949.1
(3)
P 		352.9
(-3)
P 		596
C 433.1
(-1.7)
P 		869.1
(1.5)
P 		1072.8
(3)
P 		260.3
(-3)
P 		813
avr 436.2
(-2.2) 		803.9
(1.2) 		1005.5
(3) 		342.3
(-3) 		663

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 452
1 2 3 4 5 6 range
A 452.9
(-1.1)
P 		589.6
(3)
P 		590.4
(3)
P 		513.1
(0.7)
P 		389.5
(-3)
P 		391
(-3)
P 		201
B 582.2
(-0.2)
P 		741.9
(2.8)
P 		750.4
(3)
P 		550.8
(-0.7)
P 		476.5
(-2.1)
P 		430.3
(-3)
P 		320
C 570.8
(1.9)
P 		629.7
(3)
P 		573.7
(2)
P 		539.9
(1.4)
P 		298.5
(-3)
P 		410.2
(-1)
P 		331
avr 535.3
(0.3) 		653.7
(3) 		638.2
(2.6) 		534.6
(0.3) 		388.2
(-3) 		410.5
(-2.5) 		266
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 330
1 2 3 4 range
A 160.1
(-0)
P 		163.5
(0.1)
P 		260
(3)
P 		60.6
(-3)
P 		199
B 139
(-0.4)
P 		195
(2)
P 		219.9
(3)
P 		75.2
(-3)
P 		145
C 143.4
(-1.2)
P 		249.9
(0.7)
P 		373.9
(3)
P 		43.9
(-3)
P 		330
avr 147.5
(-0.7) 		202.8
(0.8) 		284.6
(3) 		59.9
(-3) 		225

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 83.5
(-3)
P 		209.7
(3)
P 		128.6
(-0.9)
P 		130.1
(-0.8)
P 		117.5
(-1.4)
P 		95.2
(-2.4)
P 		126
B 202.6
(0.4)
P 		247
(3)
P 		182.2
(-0.8)
P 		145.9
(-3)
P 		193.6
(-0.2)
P 		160.5
(-2.1)
P 		101
C 211.6
(3)
P 		192.1
(2)
P 		146
(-0.4)
P 		108.6
(-2.4)
P 		96.6
(-3)
P 		137.3
(-0.9)
P 		115
avr 165.9
(-0.4) 		216.3
(3) 		152.3
(-1.4) 		128.2
(-3) 		135.9
(-2.5) 		131
(-2.8) 		88
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187801_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.208
Sequence Type Exemplar sequence
Representative Public ID F37F2.1 NCBI
Target Description F37F2.1 /REP_DB=WormBase Gene ID /WP=CE17802 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O61748 protein_id:AAC16996.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058453(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058453 NCBI Caenorhabditis elegans Y92H12BR.8 (Y92H12BR.8) mRNA, complete cds. 11/11 None
SNAP00000037820 ENSEMBL cdna:SNAP chromosome:CEL140:I:1440582:1444252:1 11/11 None
Y92H12BR.8 ENSEMBL cdna:known chromosome:CEL140:I:1436280:1441215:1 gene:Y92H12BR.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000037827 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1440582-1441215(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y92H12BR.8
Entrez Gene 171710 Entrez gene
SwissProt Q9BPN6 EMBL-EBI
WormBase CE26840 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1591237_AT similar to mitochondrial ribosomal protein L15 cfa
CANINE_2:CFA.9281.1.S1_AT similar to mitochondrial ribosomal protein L15 cfa
CANINE_2:CFAAFFX.11355.1.S1_S_AT similar to mitochondrial ribosomal protein L15 cfa
CANINE_2:CFAAFFX.4281.1.S1_S_AT similar to mitochondrial ribosomal protein L15 cfa
DROSOPHILA_2:1629432_AT mitochondrial ribosomal protein L15 dm
DROSGENOME1:153127_AT mitochondrial ribosomal protein L15 dm
CHICKEN:GGA.7129.2.S1_AT mitochondrial ribosomal protein L15 gga
CHICKEN:GGA.7129.3.S1_AT mitochondrial ribosomal protein L15 gga
CHICKEN:GGA.7129.3.S1_S_AT mitochondrial ribosomal protein L15 gga
HU35KSUBA:RC_AA278302_AT mitochondrial ribosomal protein L15 hs
HG-U133A:218027_AT mitochondrial ribosomal protein L15 hs
HG-U133_PLUS_2:218027_AT mitochondrial ribosomal protein L15 hs
HG-U133A_2:218027_AT mitochondrial ribosomal protein L15 hs
U133_X3P:G7661805_3P_AT mitochondrial ribosomal protein L15 hs
HG-U95C:65747_AT mitochondrial ribosomal protein L15 hs
RG-U34C:RC_AI103129_AT mitochondrial ribosomal protein L15 (predicted) rn
RAE230A:1398891_AT mitochondrial ribosomal protein L15 (predicted) rn
RAT230_2:1398891_AT mitochondrial ribosomal protein L15 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAK09082 Hypothetical protein Y92H12BR.8 [Caenorhabditis elegans] ref|NP_490854.1| Y92H12BR.8 [Caenorhabditis elegans] 1.0E-164
blast CAE69076 Hypothetical protein CBG15094 [Caenorhabditis briggsae] 1.0E-148
blast AAK09082 Hypothetical protein Y92H12BR.8 [Caenorhabditis elegans] ref|NP_490854.1| Y92H12BR.8 [Caenorhabditis elegans] 1.0E-109
blast CAE69076 Hypothetical protein CBG15094 [Caenorhabditis briggsae] 1.0E-94
blast CAE74541 Hypothetical protein CBG22298 [Caenorhabditis briggsae] 3.0E-84
blast CAE74541 Hypothetical protein CBG22298 [Caenorhabditis briggsae] 7.0E-84
Sequence
Target Sequence 
>C. ELEGANS:187801_AT
aatacattcccctatcactagttgaattggctcgtctaatcgatttaggatggataaatc
cacgtcaaccaatcgatatttccacactgtgcaccacacaaaaattccaaataaatccga
aaatgcgtcaatatggatttgatttgactgaagagggagccgattcatttccatattcaa
ttgatattgaagtacaatatgcaactccgtcagctattgcggctgttgaaaaagccggtg
gaagagttcgaactgcatattatgatgtggagagtctcgaagcggcaattaatccgaaat
gttggtttgaggcgggaaaagtggtgccgaagaggaaacaaccgccgcaaagtcttttgg
aatattatatggacgcaaaaaatcgaggatatctgtgtgaggagcaagaaatcgagaagg
agagagctctgagtgcacagattcgtggatacacactgccaccgccgccgagctctgcgg
cgctgaaagctgtagatcaagtttttcatggaattccgtcgggaagtgtggtttcgttgg
ctgatcgcaaggtttttgtgacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATACATTCCCCTATCACTAGTTGA 214 173 23 Antisense
CACGTCAACCAATCGATATTTCCAC 692 197 83 Antisense
TATTTCCACACTGTGCACCACACAA 87 663 99 Antisense
GAGCCGATTCATTTCCATATTCAAT 55 387 179 Antisense
ACTCCGTCAGCTATTGCGGCTGTTG 280 97 226 Antisense
GTGGAGAGTCTCGAAGCGGCAATTA 699 489 289 Antisense
GAAACAACCGCCGCAAAGTCTTTTG 373 311 357 Antisense
GATTCGTGGATACACACTGCCACCG 315 431 462 Antisense
CGCCGAGCTCTGCGGCGCTGAAAGC 489 257 488 Antisense
AAGTGTGGTTTCGTTGGCTGATCGC 574 159 546 Antisense
GGCTGATCGCAAGGTTTTTGTGACG 269 541 561 Antisense
Sequence Source Affymetrix Proprietary Database