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[187800_at]

Description C16H3.4 /REP_DB=WormBase Gene ID /WP=CE08238 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q94171 protein_id:AAB07583.1
Cluster 6grp_highest_10_10 > 74      6grp_high1_10_10 > 56      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 81      6grp_total > 56      4grp_total > 39      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 347
1 2 3 4 range
A 552.4
(3)
P 		251.9
(-3)
P 		251.2
(-3)
P 		317.2
(-1.7)
P 		301
B 560.2
(3)
P 		283.1
(-2.1)
P 		237.3
(-3)
P 		255.2
(-2.7)
P 		323
C 518.1
(3)
P 		214.1
(-3)
P 		213
(-3)
P 		373.6
(0.2)
P 		305
avr 543.6
(3) 		249.7
(-2.7) 		233.8
(-3) 		315.3
(-1.4) 		310

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 266
1 2 3 4 5 6 range
A 276.5
(0.6)
P 		306.2
(1.3)
P 		197.5
(-1.5)
P 		218.3
(-1)
P 		140.8
(-3)
P 		369
(3)
P 		228
B 273.8
(1)
P 		230.6
(0)
P 		221.2
(-0.2)
P 		223.1
(-0.2)
P 		102.8
(-3)
P 		357.9
(3)
P 		255
C 281.3
(1.1)
P 		223.6
(-0.8)
P 		295.9
(1.6)
P 		178.8
(-2.3)
P 		158.8
(-3)
P 		336
(3)
P 		177
avr 277.2
(0.9) 		253.5
(0.3) 		238.2
(-0.2) 		206.7
(-1) 		134.1
(-3) 		354.3
(3) 		220
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 201.1
(3)
P 		54.7
(-2.7)
P 		65.7
(-2.3)
P 		46.4
(-3)
P 		155
B 178.6
(3)
P 		69.9
(-2.3)
P 		55
(-3)
P 		54.4
(-3)
P 		124
C 171.5
(3)
P 		61.6
(-3)
P 		74.2
(-2.3)
P 		63
(-2.9)
P 		110
avr 183.7
(3) 		62.1
(-2.7) 		65
(-2.5) 		54.6
(-3) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 51
(-2.2)
P 		108.9
(3)
P 		43
(-3)
P 		55.4
(-1.8)
P 		42.5
(-3)
P 		89.8
(1.3)
P 		66
B 95.3
(0.5)
P 		76.7
(-0.7)
P 		53.7
(-2.2)
P 		59.1
(-1.9)
P 		41.7
(-3)
P 		133.5
(3)
P 		92
C 104.3
(2.4)
P 		68.2
(-0.5)
P 		75.3
(0.1)
P 		36
(-3)
P 		51.4
(-1.8)
P 		112.5
(3)
P 		77
avr 83.5
(0.4) 		84.6
(0.5) 		57.3
(-1.9) 		50.2
(-2.6) 		45.2
(-3) 		111.9
(3) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187800_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17755
Sequence Type Exemplar sequence
Representative Public ID C16H3.4 NCBI
Target Description C16H3.4 /REP_DB=WormBase Gene ID /WP=CE08238 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q94171 protein_id:AAB07583.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029238(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029238 NCBI Caenorhabditis elegans C16H3.3a (C16H3.3) mRNA, complete cds. 10/11 None
GENEFINDER00000016204 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17601886:17609957:-1 10/11 None
SNAP00000016202 ENSEMBL cdna:SNAP chromosome:CEL140:X:17609472:17609953:-1 11/11 None
C16H3.3a ENSEMBL cdna:known chromosome:CEL140:X:17601539:17609957:-1 gene:C16H3.3 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181787 2 1 NM_001029238 173527_at (11), 187800_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17609470-17609952(-) 90.51 100.0
Public Domain and Genome References
Ensembl C16H3.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB07583 Hypothetical protein C16H3.3a [Caenorhabditis elegans] ref|NP_001024409.1| C16H3.3a [Caenorhabditis elegans] 0.0
blast AAO91745 Hypothetical protein C16H3.3b [Caenorhabditis elegans] ref|NP_001024410.1| C16H3.3b [Caenorhabditis elegans] 0.0
blast CAE58698 Hypothetical protein CBG01880 [Caenorhabditis briggsae] 1.0E-101
blast AAB07583 Hypothetical protein C16H3.3a [Caenorhabditis elegans] ref|NP_001024409.1| C16H3.3a [Caenorhabditis elegans] 2.0E-50
Sequence
Target Sequence 
>C. ELEGANS:187800_AT
agaaatgtacgcaaccttactccagctccaccagtcgaggatgacgctacaatcgtgcgc
agcacattggaccgcatcctttacacagtggacgtaattaccagattcgaccaaacacgg
cgtgatattgccgctgtgcaccgaggagagagcgataaaacgatggctcaggtgatggca
gaatcgaggtggcatgaacatgcttcgaaggcgaaaaaggagtttcccatgggaagcagt
gcaaaaaaaaagaaaagttatgaagaggaggaagaggaagaagaagaagaagaagatgaa
cttccaagcacctcttccaaggtaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAATGTACGCAACCTTACTCCAG 245 73 34 Antisense
CAGCTCCACCAGTCGAGGATGACGC 355 203 56 Antisense
GATGACGCTACAATCGTGCGCAGCA 3 413 73 Antisense
CGTGCGCAGCACATTGGACCGCATC 654 245 87 Antisense
GTGGACGTAATTACCAGATTCGACC 100 489 121 Antisense
AGATTCGACCAAACACGGCGTGATA 581 65 136 Antisense
CGGCGTGATATTGCCGCTGTGCACC 604 241 151 Antisense
GCCGCTGTGCACCGAGGAGAGAGCG 678 285 163 Antisense
GATGGCTCAGGTGATGGCAGAATCG 475 405 195 Antisense
GGCAGAATCGAGGTGGCATGAACAT 60 537 210 Antisense
CTTCCAAGCACCTCTTCCAAGGTAA 389 197 334 Antisense
Sequence Source Affymetrix Proprietary Database