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[187799_at]

Description T14B4.3 /REP_DB=WormBase Gene ID /WP=CE02046 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q22482 protein_id:AAA91242.1
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 75      4grp_highest_8_8 > 38      4grp_high_8_8 > 02      6grp_highest_nonorm > 92      6grp_total > 75      4grp_total > 14      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 248.7
(0.4)
P 		199.9
(-1.9)
P 		175.8
(-3)
P 		305.4
(3)
P 		130
B 293.6
(3)
P 		198.3
(-3)
P 		220.9
(-1.6)
P 		233.9
(-0.8)
P 		95
C 231.4
(-2.3)
P 		217.6
(-3)
P 		243.2
(-1.6)
P 		330.7
(3)
P 		113
avr 257.9
(0.7) 		205.3
(-3) 		213.3
(-2.4) 		290
(3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 237
1 2 3 4 5 6 range
A 315.9
(1.2)
P 		244.5
(-3)
P 		316.5
(1.2)
P 		336.1
(2.4)
P 		291.2
(-0.3)
P 		347
(3)
P 		103
B 184.8
(-3)
P 		233.5
(-1.6)
P 		359.4
(1.9)
P 		318
(0.8)
P 		345.3
(1.5)
P 		396.6
(3)
P 		212
C 182.7
(-3)
P 		291
(-0.3)
P 		298.2
(-0.1)
P 		312.2
(0.3)
P 		189.1
(-2.8)
P 		419.3
(3)
P 		237
avr 227.8
(-3) 		256.3
(-1.9) 		324.7
(0.6) 		322.1
(0.5) 		275.2
(-1.2) 		387.6
(3) 		160
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 90.6
(3)
P 		43.4
(-3)
P 		46
(-2.7)
P 		44.7
(-2.8)
P 		47
B 93.6
(3)
P 		49
(-3)
P 		51.2
(-2.7)
P 		49.8
(-2.9)
P 		45
C 76.6
(1.3)
P 		62.6
(-1.6)
P 		84.7
(3)
P 		55.8
(-3)
P 		29
avr 86.9
(3) 		51.7
(-2.7) 		60.6
(-1.3) 		50.1
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 58.2
(-3)
P 		86.9
(2.8)
P 		68.9
(-0.8)
P 		85.2
(2.5)
P 		87.9
(3)
P 		84.5
(2.3)
P 		30
B 64.3
(-3)
P 		77.7
(-2)
P 		87.3
(-1.3)
P 		84.2
(-1.6)
P 		140.3
(2.5)
P 		147.9
(3)
P 		84
C 67.7
(-2.5)
P 		88.8
(-0.9)
P 		75.9
(-1.9)
P 		62.8
(-2.9)
P 		61.2
(-3)
P 		140.4
(3)
P 		79
avr 63.4
(-3) 		84.5
(-0.9) 		77.4
(-1.6) 		77.4
(-1.6) 		96.5
(0.3) 		124.3
(3) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187799_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4653
Sequence Type Exemplar sequence
Representative Public ID T14B4.3 NCBI
Target Description T14B4.3 /REP_DB=WormBase Gene ID /WP=CE02046 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q22482 protein_id:AAA91242.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171010(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171010 NCBI Caenorhabditis elegans T14B4.3 (T14B4.3) mRNA, complete cds. 11/11 None
SNAP00000000080 ENSEMBL cdna:SNAP chromosome:CEL140:II:6734886:6735911:1 11/11 None
GENEFINDER00000000084 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6734886:6735911:1 11/11 None
T14B4.3 ENSEMBL cdna:known chromosome:CEL140:II:6734861:6736033:1 gene:T14B4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6734882-6735908(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T14B4.3
Entrez Gene 174109 Entrez gene
SwissProt Q22482 EMBL-EBI
WormBase CE36569 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_741011 T14B4.3 [Caenorhabditis elegans] gb|AAK31551.3| Hypothetical protein T14B4.3 [Caenorhabditis elegans] 1.0E-167
blast T28893 hypothetical protein T14B4.3 - Caenorhabditis elegans 1.0E-134
blast CAE66026 Hypothetical protein CBG11220 [Caenorhabditis briggsae] 1.0E-85
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741011.2 1 252-274
T14B4.3 1 252-274
SNAP00000000080 1 252-274
GENEFINDER00000000084 1 252-274
Sequence
Target Sequence 
>C. ELEGANS:187799_AT
ggtgctgcaccaaatcaaattcaagaacatttcaaacaacagtttggtgatgatatgatt
cacgccgaagtaaactcctctggaatatttggatcatcgttgtttaaaagaaatactgag
ggaaaccatgctaattacgatacttataaggaggatcttcaaaatatgtatcgactttcg
gatgcaatcatggagaaagatcgaaaaaatgccaatgttgttgactactaccgtgttcac
cttgacgtctccaatgcgcgaacagatatggaaagaaaacaattggcagaaaatatcaag
cgaggtattgatacattacaagatgctatcaagaacagttatggcgggaatgtggtggct
gaaatctatactcacgagaagcctgatagagatgagaaggctagaattaagctgttacaa
aaagtattgcaagtgactcaagctagatatatcgattatccggcaagtgcggccattatg
atgtttgtgggattctcccttgtcttcgcggcagttgcgatgttgtggttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGCTGCACCAAATCAAATTCAAG 489 501 166 Antisense
TCACGCCGAAGTAAACTCCTCTGGA 200 627 225 Antisense
GGGAAACCATGCTAATTACGATACT 454 493 285 Antisense
ATCGACTTTCGGATGCAATCATGGA 579 35 335 Antisense
GTTGTTGACTACTACCGTGTTCACC 673 437 382 Antisense
ACGTCTCCAATGCGCGAACAGATAT 451 95 410 Antisense
GTTATGGCGGGAATGTGGTGGCTGA 463 445 503 Antisense
GGTGGCTGAAATCTATACTCACGAG 443 499 519 Antisense
GATTATCCGGCAAGTGCGGCCATTA 69 431 619 Antisense
TGTTTGTGGGATTCTCCCTTGTCTT 438 561 647 Antisense
GCGGCAGTTGCGATGTTGTGGTTGA 146 289 673 Antisense
Sequence Source Affymetrix Proprietary Database