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[187798_s_at]

Description F01F1.1 /REP_DB=WormBase Gene ID /WP=CE01222 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q19094 protein_id:AAC46635.1
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 07      4grp_highest_8_8 > 54      4grp_high_8_8 > 09      6grp_highest_nonorm > 80      6grp_total > 04      4grp_total > 23      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 228
1 2 3 4 range
A 326.3
(3)
P 		146.7
(-2.5)
P 		129
(-3)
P 		281.5
(1.6)
P 		197
B 283.6
(1.1)
P 		137.6
(-2.8)
P 		128.9
(-3)
P 		356.6
(3)
P 		228
C 326.9
(3)
P 		173.9
(-2)
P 		141.7
(-3)
P 		225.9
(-0.3)
P 		185
avr 312.3
(3) 		152.7
(-2.3) 		133.2
(-3) 		288
(2.2) 		179

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 176
(-2.8)
P 		313
(3)
P 		189
(-2.3)
P 		250.8
(0.4)
P 		171.3
(-3)
P 		238.2
(-0.2)
P 		142
B 238.7
(3)
P 		224.1
(1.1)
P 		199
(-2.2)
P 		211.2
(-0.6)
P 		223.4
(1)
P 		192.5
(-3)
P 		46
C 362.3
(3)
P 		186.4
(-3)
P 		205
(-2.4)
P 		244
(-1)
P 		214.9
(-2)
P 		191.9
(-2.8)
P 		176
avr 259
(3) 		241.2
(1.3) 		197.7
(-3) 		235.3
(0.7) 		203.2
(-2.5) 		207.5
(-2) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 118.8
(3)
P 		31.8
(-3)
P 		33.7
(-2.9)
P 		41.2
(-2.4)
P 		87
B 90.4
(3)
P 		34
(-2.6)
P 		29.9
(-3)
P 		76
(1.6)
P 		61
C 108.2
(3)
P 		50
(-2)
P 		49.4
(-2)
P 		38.1
(-3)
P 		70
avr 105.8
(3) 		38.6
(-2.9) 		37.7
(-3) 		51.8
(-1.8) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 32.5
(-3)
P 		111.3
(3)
P 		41.2
(-2.3)
P 		63.6
(-0.6)
P 		51.7
(-1.5)
P 		58
(-1.1)
P 		79
B 83
(1.9)
P 		74.6
(0.7)
P 		48.3
(-3)
P 		56
(-1.9)
P 		90.8
(3)
P 		71.8
(0.3)
P 		43
C 134.3
(3)
P 		56.9
(-2.5)
P 		52.2
(-2.8)
P 		49.1
(-3)
P 		69.5
(-1.6)
P 		64.2
(-1.9)
P 		85
avr 83.3
(3) 		80.9
(2.6) 		47.2
(-3) 		56.2
(-1.5) 		70.7
(0.9) 		64.7
(-0.1) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187798_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6705
Sequence Type Exemplar sequence
Representative Public ID F01F1.1 NCBI
Target Description F01F1.1 /REP_DB=WormBase Gene ID /WP=CE01222 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q19094 protein_id:AAC46635.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065873(11), NM_065874(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065873 NCBI Caenorhabditis elegans F01F1.1a (F01F1.1) mRNA, complete cds. 11/11 None
NM_065874 NCBI Caenorhabditis elegans F01F1.1c (F01F1.1) mRNA, complete cds. 11/11 None
GENEFINDER00000009939 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5878508:5882121:1 11/11 None
SNAP00000009930 ENSEMBL cdna:SNAP chromosome:CEL140:III:5879822:5882121:1 11/11 None
F01F1.1a ENSEMBL cdna:known chromosome:CEL140:III:5879455:5882381:1 gene:F01F1.1 11/11 None
F01F1.1c ENSEMBL cdna:known chromosome:CEL140:III:5879794:5882121:1 gene:F01F1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175829 3 2 NM_065873 187798_s_at (11)
NM_065874 187798_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5879791-5882120(+) 99.79 99.79
Public Domain and Genome References
Ensembl F01F1.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46635 Hypothetical protein F01F1.1a [Caenorhabditis elegans] ref|NP_498274.1| F01F1.1a [Caenorhabditis elegans] 0.0
blast AAN63418 Hypothetical protein F01F1.1c [Caenorhabditis elegans] ref|NP_498275.2| F01F1.1c [Caenorhabditis elegans] 0.0
blast CAE64370 Hypothetical protein CBG09057 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005062 EMBL-EBI SAC3/GANP family 7.3E-112
Pfam IPR005062 EMBL-EBI SAC3/GANP family 7.3E-112
Pfam IPR005062 EMBL-EBI SAC3/GANP family 7.3E-112
Pfam IPR005062 EMBL-EBI SAC3/GANP family 8.3E-72
Pfam IPR005062 EMBL-EBI SAC3/GANP family 3.7E-21
Sequence
Target Sequence 
>C. ELEGANS:187798_S_AT
ggccactggaagttttgcgcctttctcttcaaaatgtacgtgacaaatatcgtgcgagag
cagagtattcctatctgacaagtcaaatgagatcgattcgccaagacttgacggttcaag
tgattcgcaacgagtttacagtcgaagtctatgaaataaatgctagaatttcgcttgaaa
acgcggatcgagaagagtttaacaagtgccagtcgcagttgaaacttctctactcggaaa
ttgagaattgcgcgaatcaggcagagtttgtagcttatcgtctgttgtactacattgcta
tggacaatcaaattgatatcaacgcgctgctccgtgagctaacgccggaattgaaggaga
atgactgtgttgaatttgcattgaatgttcgaaaagctaatgctccacgaatgtgcccgt
acataatggatttatttgttgatcgagagagaaagaaggcactcggaattatcacaaaag
ctttccgaccaacaatcacgtacaaattgattgcggagtttctgagtatgaaggagtcga
cacttattgattggctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCCACTGGAAGTTTTGCGCCTTTC 66 537 1283 Antisense
TTTGCGCCTTTCTCTTCAAAATGTA 9 669 1296 Antisense
GAGTATTCCTATCTGACAAGTCAAA 534 397 1345 Antisense
GAGATCGATTCGCCAAGACTTGACG 266 397 1371 Antisense
GACGGTTCAAGTGATTCGCAACGAG 404 375 1392 Antisense
CGCAGTTGAAACTTCTCTACTCGGA 299 255 1496 Antisense
GAGTTTGTAGCTTATCGTCTGTTGT 428 399 1546 Antisense
CTGCTCCGTGAGCTAACGCCGGAAT 189 237 1609 Antisense
CTCCACGAATGTGCCCGTACATAAT 234 235 1685 Antisense
AAAGCTTTCCGACCAACAATCACGT 627 123 1759 Antisense
GAGTCGACACTTATTGATTGGCTCG 53 401 1816 Antisense
Sequence Source Affymetrix Proprietary Database