[Home] | [Total List]

[187797_at]

Description F53C3.6 /REP_DB=WormBase Gene ID /WP=CE19444 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q9TXT3 protein_id:AAC67457.1
Cluster 4grp_high_8_8 > 18      6grp_total > 18      4grp_total > 37      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 118.5
(3)
P 		75.3
(-3)
A 		98.5
(0.2)
P 		92
(-0.7)
P 		43
B 101.8
(2.6)
P 		101
(2.6)
P 		39.7
(-3)
A 		105.9
(3)
P 		66
C 85.4
(3)
P 		76.5
(1.9)
P 		35.3
(-3)
P 		61.7
(0.2)
M 		50
avr 101.9
(3) 		84.3
(0.6) 		57.8
(-3) 		86.5
(0.9) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 116.3
(3)
P 		57.9
(-0.5)
P 		38.8
(-1.7)
A 		52.6
(-0.8)
P 		57.8
(-0.5)
P 		16.6
(-3)
A 		100
B 128.2
(3)
P 		75.8
(-0.7)
P 		87.6
(0.1)
M 		48.3
(-2.7)
P 		43.5
(-3)
A 		44.4
(-2.9)
M 		85
C 100
(3)
P 		62.7
(0.6)
P 		6.8
(-3)
A 		32.8
(-1.3)
A 		58
(0.3)
P 		57.1
(0.2)
P 		93
avr 114.8
(3) 		65.5
(-0.9) 		44.4
(-2.6) 		44.6
(-2.6) 		53.1
(-1.9) 		39.4
(-3) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 43.2
(3)
P 		16.3
(-2.4)
A 		25.7
(-0.5)
P 		13.5
(-3)
P 		30
B 32.5
(3)
P 		25
(1.1)
P 		9.2
(-3)
A 		22.6
(0.5)
P 		23
C 28.3
(3)
P 		22
(0.9)
P 		12.3
(-2.4)
P 		10.4
(-3)
M 		18
avr 34.7
(3) 		21.1
(-1.3) 		15.7
(-2.9) 		15.5
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 21.4
(3)
P 		20.6
(2.7)
P 		8.5
(-1.4)
A 		13.3
(0.2)
P 		17.4
(1.6)
P 		4
(-3)
A 		17
B 44.6
(3)
P 		25.2
(-0.7)
P 		21.3
(-1.4)
M 		12.8
(-3)
P 		17.7
(-2.1)
A 		16.6
(-2.3)
M 		32
C 37.1
(3)
P 		19.1
(-0.1)
P 		1.7
(-3)
A 		6.6
(-2.2)
A 		18.8
(-0.1)
P 		19.1
(-0.1)
P 		35
avr 34.4
(3) 		21.6
(-0.2) 		10.5
(-3) 		10.9
(-2.9) 		18
(-1.1) 		13.2
(-2.3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187797_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5171
Sequence Type Exemplar sequence
Representative Public ID F53C3.6 NCBI
Target Description F53C3.6 /REP_DB=WormBase Gene ID /WP=CE19444 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q9TXT3 protein_id:AAC67457.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062286(10), NM_062287(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062286 NCBI Caenorhabditis elegans F53C3.6a (F53C3.6) mRNA, complete cds. 10/11 A 
NM_062287 NCBI Caenorhabditis elegans F53C3.6b (F53C3.6) mRNA, complete cds. 9/11 A 
F53C3.6a.2 ENSEMBL cdna:known chromosome:CEL140:II:3898128:3899559:1 gene:F53C3.6 10/11 None
F53C3.6a.1 ENSEMBL cdna:known chromosome:CEL140:II:3898135:3899656:1 gene:F53C3.6 10/11 None
F53C3.6b ENSEMBL cdna:known chromosome:CEL140:II:3898149:3899559:1 gene:F53C3.6 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027221 2/11 Cross Hyb Matching Probes None
GENEFINDER00000027238 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3898101-3899276(+) 78.26 100.0
Public Domain and Genome References
Ensembl F53C3.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK73869 Hypothetical protein F53C3.6a [Caenorhabditis elegans] ref|NP_494687.2| F53C3.6a [Caenorhabditis elegans] 1.0E-104
blast AAK73870 Hypothetical protein F53C3.6b [Caenorhabditis elegans] ref|NP_494688.1| F53C3.6b [Caenorhabditis elegans] 6.0E-90
blast AAK73869 Hypothetical protein F53C3.6a [Caenorhabditis elegans] ref|NP_494687.2| F53C3.6a [Caenorhabditis elegans] 6.0E-90
blast AAK73870 Hypothetical protein F53C3.6b [Caenorhabditis elegans] ref|NP_494688.1| F53C3.6b [Caenorhabditis elegans] 3.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR002619 EMBL-EBI Protein of unknown function CX 6.7E-28
Pfam IPR002619 EMBL-EBI Protein of unknown function CX 6.7E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494687.2 1 187-206
NP_494688.1 1 88-107
F53C3.6a.2 1 187-206
F53C3.6a.1 1 187-206
F53C3.6b 1 88-107
Sequence
Target Sequence 
>C. ELEGANS:187797_AT
agttacagaatttgtgtcactgcaagaatgaatcgcctgatttggagcttcttgctcatt
ttctctttattgggtagaaatctggatgcaagaggcggtagaggccgtggcggcggcggc
ggtggccgtggttctagtggtgcacgaggtggtgtaggaggacgcggtggcggtggacgt
ggtggcggcggcggcggcttcagatcaggaggtgcccgatcgagcttcagcagttttagt
tacgaaaacaaccattactactgggcagggcatcatgtgaatactacagaaaaaccttac
aagtgtgattatcaaatcacttatgaggatatggaattgagacatgtgacattcgcaaat
ggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTACAGAATTTGTGTCACTGCAA 573 63 37 Antisense
GTCACTGCAAGAATGAATCGCCTGA 446 465 52 Antisense
GAATCGCCTGATTTGGAGCTTCTTG 642 329 66 Antisense
TTGCTCATTTTCTCTTTATTGGGTA 264 691 88 Antisense
GCAAGAGGCGGTAGAGGCCGTGGCG 29 317 124 Antisense
GTGGCCGTGGTTCTAGTGGTGCACG 526 489 158 Antisense
GTGGTGCACGAGGTGGTGTAGGAGG 546 487 173 Antisense
GGTGTAGGAGGACGCGGTGGCGGTG 228 499 187 Antisense
TCGAGCTTCAGCAGTTTTAGTTACG 273 601 256 Antisense
AACAACCATTACTACTGGGCAGGGC 311 129 283 Antisense
GAGACATGTGACATTCGCAAATGGC 324 393 375 Antisense
Sequence Source Affymetrix Proprietary Database