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[187796_at]

Description F47B7.2 /REP_DB=WormBase Gene ID /WP=CE04599 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q20514 protein_id:AAA80371.1
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 81      4grp_highest_8_8 > 13      4grp_high_8_8 > 31      6grp_highest_nonorm > 62      6grp_total > 81      4grp_total > 24      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 501
1 2 3 4 range
A 231.5
(-3)
P 		315
(-1.9)
P 		547
(1.2)
P 		686.9
(3)
P 		455
B 201.5
(-3)
P 		504.9
(0.6)
P 		442.9
(-0.1)
P 		702.4
(3)
P 		501
C 213.2
(-3)
P 		488.1
(1.1)
P 		616.1
(3)
P 		542
(1.9)
P 		403
avr 215.4
(-3) 		436
(0.1) 		535.3
(1.5) 		643.8
(3) 		428

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 483
1 2 3 4 5 6 range
A 253.6
(-3)
P 		415.1
(-0.6)
P 		379.5
(-1.1)
P 		652.6
(3)
P 		575
(1.8)
P 		360.7
(-1.4)
P 		399
B 306.8
(-3)
P 		412.4
(-1.5)
P 		415.7
(-1.5)
P 		736.2
(3)
P 		527.6
(0.1)
P 		315.2
(-2.9)
P 		429
C 344.8
(-2.6)
P 		420.5
(-1.4)
P 		472.6
(-0.5)
P 		695.2
(3)
P 		604.5
(1.6)
P 		316.8
(-3)
P 		378
avr 301.7
(-3) 		416
(-1.3) 		422.6
(-1.2) 		694.7
(3) 		569
(1.1) 		330.9
(-2.6) 		393
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 84.3
(-1.7)
P 		68.4
(-3)
P 		143
(3)
P 		100.6
(-0.4)
P 		75
B 64.3
(-3)
P 		124.7
(1.2)
P 		102.6
(-0.3)
P 		149.7
(3)
P 		85
C 70.6
(-3)
P 		140.3
(-0.1)
P 		214.7
(3)
P 		91.4
(-2.1)
P 		144
avr 73.1
(-3) 		111.1
(-0.2) 		153.4
(3) 		113.9
(0) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 46.8
(-3)
P 		147.6
(1.8)
P 		82.7
(-1.3)
P 		165.5
(2.6)
P 		173.5
(3)
P 		87.8
(-1.1)
P 		127
B 106.8
(-2.7)
P 		137.3
(-1.1)
P 		100.9
(-3)
P 		195
(2)
P 		214.3
(3)
P 		117.6
(-2.1)
P 		113
C 127.8
(-1.5)
P 		128.3
(-1.5)
P 		120.3
(-2)
P 		139.8
(-0.7)
P 		195.6
(3)
P 		106.1
(-3)
P 		90
avr 93.8
(-3) 		137.7
(-0.4) 		101.3
(-2.6) 		166.8
(1.3) 		194.5
(3) 		103.8
(-2.4) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187796_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18471
Sequence Type Exemplar sequence
Representative Public ID F47B7.2 NCBI
Target Description F47B7.2 /REP_DB=WormBase Gene ID /WP=CE04599 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q20514 protein_id:AAA80371.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076253(11), NM_076251(11), NM_076252(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076253 NCBI Caenorhabditis elegans F47B7.2a (F47B7.2) mRNA, complete cds. 11/11 None
NM_076251 NCBI Caenorhabditis elegans F47B7.2b (F47B7.2) mRNA, complete cds. 11/11 None
NM_076252 NCBI Caenorhabditis elegans F47B7.2c (F47B7.2) mRNA, complete cds. 11/11 None
GENEFINDER00000025977 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3770735:3777047:1 11/11 None
SNAP00000025970 ENSEMBL cdna:SNAP chromosome:CEL140:X:3773686:3777047:1 11/11 None
F47B7.2a ENSEMBL cdna:known chromosome:CEL140:X:3772742:3778041:1 gene:F47B7.2 11/11 None
F47B7.2c ENSEMBL cdna:known chromosome:CEL140:X:3772761:3778002:1 gene:F47B7.2 11/11 None
F47B7.2b ENSEMBL cdna:known chromosome:CEL140:X:3772761:3778064:1 gene:F47B7.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3772761-3776874(+) 100.0 100.0
Public Domain and Genome References
Ensembl F47B7.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA80371 Hypothetical protein F47B7.2a [Caenorhabditis elegans] ref|NP_508654.1| F47B7.2a [Caenorhabditis elegans] 0.0
blast AAK72058 Hypothetical protein F47B7.2c [Caenorhabditis elegans] ref|NP_508653.1| F47B7.2c [Caenorhabditis elegans] 0.0
blast AAK72057 Hypothetical protein F47B7.2b [Caenorhabditis elegans] ref|NP_508652.1| F47B7.2b [Caenorhabditis elegans] 0.0
blast CAE68480 Hypothetical protein CBG14281 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006863 EMBL-EBI Erv1/Alr 1.6E-15
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 1.1E-8
Pfam IPR006863 EMBL-EBI Erv1/Alr 1.6E-15
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 1.1E-8
Pfam IPR006863 EMBL-EBI Erv1/Alr 1.6E-15
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 1.1E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508654.1 1 12-34
NP_508652.1 2 12-34,627-644
NP_508653.1 1 12-34
F47B7.2a 1 12-34
F47B7.2c 1 12-34
F47B7.2b 2 12-34,627-644
GENEFINDER00000025977 2 96-118,712-731
SNAP00000025970 1 605-624
Sequence
Target Sequence 
>C. ELEGANS:187796_AT
ggttatacctgcggtctttggacactggctcacacaatcaccgtggaagcttacaaacag
gagaagcacaataccgctttcaagcctgtgatcgacgtcctcgagccattccgcgcgttc
attttccatttcttaagttgctccgagtgtgcgcaaaacttcaccaaagaagcggaaaag
aaccagctccatttggtgaccaggcctgaagacgtgtacgcatggctgtggagagttcac
aattttgtcaacaagcgcctttctggctcactaaccgacgacccgtctttcaagaaacaa
cagttcccaccgaagtcgctgtgtgcagattgttatgatgcgaatggagatattgatgaa
gcgaaggcgctgccattcgttttcaaatattattccaatatcaagacagattcaacagat
aatctacctgggtacaaagttgttgagtacaaggaaggcaaaactctttctgctggcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTATACCTGCGGTCTTTGGACAC 284 507 1258 Antisense
TTTGGACACTGGCTCACACAATCAC 216 667 1274 Antisense
CGCTTTCAAGCCTGTGATCGACGTC 654 253 1332 Antisense
TTTCCATTTCTTAAGTTGCTCCGAG 610 669 1380 Antisense
GCTCCGAGTGTGCGCAAAACTTCAC 204 299 1397 Antisense
GACCAGGCCTGAAGACGTGTACGCA 385 383 1455 Antisense
GTGTACGCATGGCTGTGGAGAGTTC 656 485 1471 Antisense
TGTCAACAAGCGCCTTTCTGGCTCA 313 559 1503 Antisense
TCCCACCGAAGTCGCTGTGTGCAGA 652 597 1562 Antisense
TGAAGCGAAGGCGCTGCCATTCGTT 266 575 1614 Antisense
AAGGCAAAACTCTTTCTGCTGGCCA 681 159 1712 Antisense
Sequence Source Affymetrix Proprietary Database