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[187795_at]

Description B0034.3 /REP_DB=WormBase Gene ID /WP=CE02411 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q10911 protein_id:AAC38816.1
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 16      4grp_highest_8_8 > 60      4grp_high_8_8 > 25      6grp_highest_nonorm > 11      6grp_total > 16      4grp_total > 38      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3108
1 2 3 4 range
A 4802.8
(3)
P 		1942.5
(-2.7)
P 		1804.1
(-3)
P 		2959.9
(-0.7)
P 		2999
B 4286.5
(3)
P 		2485.8
(-1.2)
P 		1694.5
(-3)
P 		2768.9
(-0.5)
P 		2592
C 4673.8
(3)
P 		2989.5
(-0.8)
P 		2028.1
(-3)
P 		2594.8
(-1.7)
P 		2646
avr 4587.7
(3) 		2472.6
(-1.6) 		1842.2
(-3) 		2774.5
(-1) 		2746

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2676
1 2 3 4 5 6 range
A 1620
(-0.6)
P 		2913.1
(3)
P 		765.2
(-3)
P 		1273.6
(-1.6)
P 		905.7
(-2.6)
P 		1610.3
(-0.6)
P 		2148
B 2023.2
(3)
P 		1350.8
(-0.5)
P 		1155.5
(-1.5)
P 		971.5
(-2.5)
P 		874.1
(-3)
P 		989.3
(-2.4)
P 		1149
C 3441.5
(3)
P 		1223.9
(-2.3)
P 		1990
(-0.5)
P 		936.8
(-3)
P 		1546.5
(-1.5)
P 		1028.3
(-2.8)
P 		2505
avr 2361.6
(3) 		1829.3
(0.5) 		1303.6
(-1.9) 		1060.6
(-3) 		1108.8
(-2.8) 		1209.3
(-2.3) 		1301
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1356
1 2 3 4 range
A 1748.7
(3)
P 		421.7
(-3)
P 		471.6
(-2.8)
P 		433.3
(-2.9)
P 		1327
B 1366.9
(3)
P 		613.9
(-1.6)
P 		392.7
(-3)
P 		590.1
(-1.8)
P 		974
C 1547.2
(3)
P 		859.5
(-0.7)
P 		706.8
(-1.5)
P 		437.5
(-3)
P 		1110
avr 1554.3
(3) 		631.7
(-2.2) 		523.7
(-2.8) 		487
(-3) 		1067

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1109
1 2 3 4 5 6 range
A 298.6
(-2.1)
P 		1036
(3)
P 		166.7
(-3)
P 		323
(-1.9)
P 		273.3
(-2.3)
P 		392.1
(-1.4)
P 		869
B 704
(3)
P 		449.6
(-0.4)
P 		280.6
(-2.7)
P 		257.3
(-3)
P 		355.2
(-1.7)
P 		368.9
(-1.5)
P 		447
C 1275.6
(3)
P 		373.5
(-2)
P 		506.5
(-1.2)
P 		188.4
(-3)
P 		500.4
(-1.3)
P 		344.2
(-2.1)
P 		1087
avr 759.4
(3) 		619.7
(1.3) 		317.9
(-2.3) 		256.2
(-3) 		376.3
(-1.6) 		368.4
(-1.7) 		503
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187795_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5615
Sequence Type Exemplar sequence
Representative Public ID B0034.3 NCBI
Target Description B0034.3 /REP_DB=WormBase Gene ID /WP=CE02411 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q10911 protein_id:AAC38816.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025939(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025939 NCBI Caenorhabditis elegans CaDHerin family member (cdh-11) (cdh-11) mRNA, complete cds. 11/11 None
B0034.3a ENSEMBL cdna:known chromosome:CEL140:II:5945377:5956643:-1 gene:B0034.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062788 8/11 Cross Hyb Matching Probes A 
SNAP00000014833 7/11 Cross Hyb Matching Probes None
SNAP00000014834 3/11 Cross Hyb Matching Probes None
GENEFINDER00000014842 7/11 Cross Hyb Matching Probes None
GENEFINDER00000014846 3/11 Cross Hyb Matching Probes None
B0034.3b 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174006 2 1 NM_001025939 174826_at (11), 187795_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5945811-5956601(-) 100.0 100.0
Public Domain and Genome References
Ensembl B0034.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31387 Cadherin family protein 11, isoform a [Caenorhabditis elegans] ref|NP_001021110.1| CaDHerin family member (cdh-11) [Caenorhabditis elegans] gb|AAM00045.1| calsyntenin [Caenorhabditis elegans] 0.0
blast T29037 hypothetical protein B0034.3 - Caenorhabditis elegans 0.0
blast CAE59228 Hypothetical protein CBG02547 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002126 EMBL-EBI Cadherin 2.7E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021110.1 1 849-871
B0034.3a 1 849-871
Sequence
Target Sequence 
>C. ELEGANS:187795_AT
cagctcaaccagatccgattcaatttaactttaattctggagagactgctcttgatagtt
tggaacttattgagcgtcacttcgagccagctttcgatcaacttggaagctctagacttc
agaacattctggaaatggacctcccgcgtccgaaagcactgctctctcatcacggatacg
atgtcggacaaggcgcgatcgctggtggcgccgtcgccgtcgtcgtcgttgtttgcgtcg
gtttcctgttagtgttgctcgtcatcggagtgctcaaaatgcgagacaccccaatgccac
gacgacgaaggcagaagagacagagtgacggaggaatgcattgggacgatagtggcatga
acatcacagtcaatccattggatgacgttgaaaagaacggtggtgcaattgatgagttca
gtgatgaggaagaagaagaggaaaccgatggagaaagtgaatgctcgtatcgagacgaag
aagatgatgtgtcagaagatgaagaagatcaaacagaagttcttccacatttggatgcaa
atcaacgtgtcgttggaggtcttgagtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGCTCAACCAGATCCGATTCAATT 604 203 2420 Antisense
CTTATTGAGCGTCACTTCGAGCCAG 496 221 2485 Antisense
CGAGCCAGCTTTCGATCAACTTGGA 687 249 2502 Antisense
AACATTCTGGAAATGGACCTCCCGC 158 137 2542 Antisense
CTGCTCTCTCATCACGGATACGATG 675 237 2578 Antisense
CAAGGCGCGATCGCTGGTGGCGCCG 636 183 2608 Antisense
TGCGTCGGTTTCCTGTTAGTGTTGC 249 583 2653 Antisense
TGTTGCTCGTCATCGGAGTGCTCAA 459 563 2672 Antisense
TCAAAATGCGAGACACCCCAATGCC 708 629 2693 Antisense
GTGGCATGAACATCACAGTCAATCC 158 491 2771 Antisense
AACGTGTCGTTGGAGGTCTTGAGTG 466 135 2963 Antisense
Sequence Source Affymetrix Proprietary Database