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[187794_s_at]

Description C54G6.1 /REP_DB=WormBase Gene ID /WP=CE17604 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O44979 protein_id:AAB97560.1
Cluster 6grp_total > 96      4grp_total > 24      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 42.9
(-3)
A 		72.2
(-0.1)
A 		58.1
(-1.5)
A 		103.8
(3)
A 		61
B 25
(-3)
A 		38.8
(-1.2)
A 		70.9
(3)
A 		66.2
(2.4)
A 		46
C 24.8
(-3)
A 		49.1
(-1.4)
A 		74.5
(0.2)
A 		118.1
(3)
A 		93
avr 30.9
(-3) 		53.4
(-0.9) 		67.8
(0.4) 		96
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 206
1 2 3 4 5 6 range
A 66
(-1.3)
A 		8.8
(-3)
A 		43.3
(-2)
A 		76.3
(-1)
A 		134.8
(0.7)
P 		210.6
(3)
A 		202
B 4.7
(-3)
A 		40.3
(-1.9)
A 		48.8
(-1.6)
A 		75
(-0.8)
M 		119.6
(0.7)
P 		192.3
(3)
P 		188
C 30.8
(-2.3)
A 		14.1
(-3)
A 		40.9
(-1.9)
A 		138.1
(2.1)
A 		112.9
(1)
A 		161.4
(3)
P 		147
avr 33.8
(-2.5) 		21.1
(-3) 		44.3
(-2.2) 		96.5
(-0.3) 		122.4
(0.6) 		188.1
(3) 		167
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 15.6
(1.8)
A 		15.7
(3)
A 		15.2
(-3)
A 		15.2
(-3)
A 		1
B 8
(-3)
A 		9.6
(-1.9)
A 		16.4
(3)
A 		14.1
(1.4)
A 		8
C 8.2
(-3)
A 		14.1
(-1)
A 		26
(3)
A 		19.9
(0.9)
A 		18
avr 10.6
(-3) 		13.1
(-1.3) 		19.2
(3) 		16.4
(1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 12.2
(-1.9)
A 		3.1
(-3)
A 		9.4
(-2.2)
A 		19.4
(-1)
A 		40.7
(1.7)
P 		51.3
(3)
A 		48
B 1.6
(-3)
A 		13.4
(-2)
A 		11.8
(-2.1)
A 		19.9
(-1.4)
M 		48.6
(1)
P 		71.7
(3)
P 		70
C 11.4
(-2.1)
A 		4.3
(-3)
A 		10.4
(-2.3)
A 		27.8
(-0.2)
A 		36.5
(0.9)
A 		54
(3)
P 		50
avr 8.4
(-2.8) 		6.9
(-3) 		10.5
(-2.6) 		22.4
(-1.2) 		41.9
(1) 		59
(3) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187794_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23
Sequence Type Exemplar sequence
Representative Public ID C54G6.1 NCBI
Target Description C54G6.1 /REP_DB=WormBase Gene ID /WP=CE17604 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O44979 protein_id:AAB97560.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058405(11), NM_058406(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058405 NCBI Caenorhabditis elegans C54G6.1a (C54G6.1) mRNA, complete cds. 11/11 None
NM_058406 NCBI Caenorhabditis elegans C54G6.1b (C54G6.1) mRNA, complete cds. 11/11 None
SNAP00000006754 ENSEMBL cdna:SNAP chromosome:CEL140:I:999840:1014309:-1 11/11 None
GENEFINDER00000006760 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1011515:1015733:-1 11/11 None
C54G6.1a ENSEMBL cdna:known chromosome:CEL140:I:1011446:1014316:-1 gene:C54G6.1 11/11 None
C54G6.1b ENSEMBL cdna:known chromosome:CEL140:I:1011515:1014310:-1 gene:C54G6.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1011514-1014309(-) 100.0 100.0
Public Domain and Genome References
Ensembl C54G6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB97560 Hypothetical protein C54G6.1a [Caenorhabditis elegans] ref|NP_490806.1| C54G6.1a [Caenorhabditis elegans] 1.0E-159
blast AAK68268 Hypothetical protein C54G6.1b [Caenorhabditis elegans] ref|NP_490807.1| C54G6.1b [Caenorhabditis elegans] 1.0E-155
blast AAK68268 Hypothetical protein C54G6.1b [Caenorhabditis elegans] ref|NP_490807.1| C54G6.1b [Caenorhabditis elegans] 1.0E-153
blast AAB97560 Hypothetical protein C54G6.1a [Caenorhabditis elegans] ref|NP_490806.1| C54G6.1a [Caenorhabditis elegans] 1.0E-153
blast AAB97560 Hypothetical protein C54G6.1a [Caenorhabditis elegans] ref|NP_490806.1| C54G6.1a [Caenorhabditis elegans] 1.0E-150
blast AAK68268 Hypothetical protein C54G6.1b [Caenorhabditis elegans] ref|NP_490807.1| C54G6.1b [Caenorhabditis elegans] 1.0E-146
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000006760 1 5-24
Sequence
Target Sequence 
>C. ELEGANS:187794_S_AT
gcacaatccagcggctccaataaatcgaaaacgtggcacactcaaaacagagctggaaac
attttacgatgttccgcaagtccgaactctgacctgtgagctgctggatatggtgaaaga
agagccatcgatttgggataagatcagatgtgtcgattttggatgtcatcagcggatgcg
gcaggcatggtgcagtatttcgttgaagctcggcggctggggagccattcagcacgtgca
tatgttgaagcagttgtacaggaagaagagggatttgtataatgtccaatatttgagaag
tggccgggagtttgaatattgcgaaaaactgagttttctgaaagatgtactggaaatggc
gaaaaacgatccgctggacaagaacattcaactcgacgagcacctaaagaccgccactcc
gattatcgattttgatgcggaacttctcgcggcgcccgccgaaattcaacaaattttgag
agaaatttccgaaaaaatcgataaagtgacaacatctcaatcgccaggatttttagccga
atatcttgccacgtgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACAATCCAGCGGCTCCAATAAAT 611 317 219 Antisense
ATTTTACGATGTTCCGCAAGTCCGA 231 13 279 Antisense
CAAGTCCGAACTCTGACCTGTGAGC 246 183 295 Antisense
GCGGCAGGCATGGTGCAGTATTTCG 1 295 396 Antisense
CAGTATTTCGTTGAAGCTCGGCGGC 167 205 411 Antisense
GGAGCCATTCAGCACGTGCATATGT 48 523 439 Antisense
CAAGAACATTCAACTCGACGAGCAC 329 185 597 Antisense
ACCGCCACTCCGATTATCGATTTTG 89 91 628 Antisense
TTTTGATGCGGAACTTCTCGCGGCG 436 675 648 Antisense
AAGTGACAACATCTCAATCGCCAGG 439 159 722 Antisense
TTTAGCCGAATATCTTGCCACGTGT 173 671 750 Antisense
Sequence Source Affymetrix Proprietary Database