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[187792_at]

Description C26E6.7 /REP_DB=WormBase Gene ID /WP=CE24812 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q18222 protein_id:AAA21161.1
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 68      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 85      6grp_total > 69      4grp_total > 38      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 505
1 2 3 4 range
A 661.6
(3)
P 		515.3
(0.3)
P 		340.4
(-3)
P 		482.8
(-0.3)
P 		321
B 775.3
(3)
P 		401.8
(-1.4)
P 		270.1
(-3)
P 		497.2
(-0.3)
P 		505
C 737.3
(3)
P 		341.3
(-3)
P 		388.6
(-2.3)
P 		379.9
(-2.4)
P 		396
avr 724.7
(3) 		419.5
(-1.7) 		333
(-3) 		453.3
(-1.2) 		392

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 380
1 2 3 4 5 6 range
A 809.4
(1)
P 		898.7
(2.8)
P 		614
(-3)
P 		622.6
(-2.8)
P 		736.5
(-0.5)
P 		906.7
(3)
P 		293
B 703.9
(-1.8)
P 		713.5
(-1.5)
P 		722.6
(-1.3)
P 		656.9
(-3)
P 		772.7
(0)
P 		886
(3)
P 		229
C 825.4
(-0.1)
P 		809
(-0.4)
P 		790.3
(-0.7)
P 		666
(-3)
P 		761.5
(-1.3)
P 		993.5
(3)
P 		328
avr 779.6
(-0.2) 		807.1
(0.4) 		709
(-1.7) 		648.5
(-3) 		756.9
(-0.7) 		928.7
(3) 		280
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 240.9
(3)
P 		111.8
(-1.6)
P 		89
(-2.4)
P 		70.7
(-3)
P 		170
B 247.2
(3)
P 		99.2
(-1.8)
P 		62.6
(-3)
P 		105.9
(-1.6)
P 		185
C 244.1
(3)
P 		98.1
(-1.9)
P 		135.5
(-0.6)
P 		64
(-3)
P 		180
avr 244.1
(3) 		103
(-2.2) 		95.7
(-2.4) 		80.2
(-3) 		164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 199
1 2 3 4 5 6 range
A 149.2
(-2.5)
P 		319.6
(3)
P 		133.7
(-3)
P 		157.9
(-2.2)
P 		222.2
(-0.1)
P 		220.7
(-0.2)
P 		186
B 244.9
(-0.3)
P 		237.5
(-0.6)
P 		175.5
(-2.9)
P 		174
(-3)
P 		313.9
(2.4)
P 		330.4
(3)
P 		156
C 306
(2.2)
P 		246.9
(0.4)
P 		201.2
(-1)
P 		133.9
(-3)
P 		246.4
(0.4)
P 		332.6
(3)
P 		199
avr 233.4
(0.4) 		268
(1.9) 		170.1
(-2.4) 		155.3
(-3) 		260.8
(1.5) 		294.6
(3) 		139
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187792_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7907
Sequence Type Exemplar sequence
Representative Public ID C26E6.7 NCBI
Target Description C26E6.7 /REP_DB=WormBase Gene ID /WP=CE24812 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q18222 protein_id:AAA21161.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065643(11), NM_065642(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065643 NCBI Caenorhabditis elegans C26E6.7a (C26E6.7) mRNA, complete cds. 11/11 None
NM_065642 NCBI Caenorhabditis elegans C26E6.7b (C26E6.7) mRNA, complete cds. 11/11 None
GENEFINDER00000014715 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4932585:4934879:1 11/11 None
C26E6.7a ENSEMBL cdna:known chromosome:CEL140:III:4932438:4934879:1 gene:C26E6.7 11/11 None
C26E6.7b ENSEMBL cdna:known chromosome:CEL140:III:4932585:4934879:1 gene:C26E6.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014700 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4932439-4934879(+) 100.0 100.0
Public Domain and Genome References
Ensembl C26E6.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN63443 Hypothetical protein C26E6.7a [Caenorhabditis elegans] ref|NP_498044.2| C26E6.7a [Caenorhabditis elegans] 0.0
blast AAN63444 Hypothetical protein C26E6.7b [Caenorhabditis elegans] ref|NP_498043.2| C26E6.7b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:187792_AT
aatttgcacagtattcctagtcaataatcttccgaaaaaaatactcgcacaagatttcgt
tgaagaatctagagttttgaaacctgaagggagttcttcagccgtatcaagcacaactgt
cctagaagaatcacatcaaaaaatcagtggagctatggaagactctgaggatgaacctgc
tgatccacaaacgttgaaacaagaatatttgattaaagaggaatgttctgaaatatcaga
agattctgaagaaggagctatcgtcgatgttgcttccagctcaggcgacttatccgaaaa
ccgtgatcagaaatctgaaaacgaagaatttgaatattccccgcatcagttaactcttga
gcaacaaacatatttgatttcctctatggcgcaactctctattttccatttccaacgcta
tcgccaaataagagtattccttatgattataaaacgttacgtgccagaacttttacctag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTGCACAGTATTCCTAGTCAAT 68 173 1422 Antisense
AATACTCGCACAAGATTTCGTTGAA 502 171 1461 Antisense
GAAGGGAGTTCTTCAGCCGTATCAA 285 335 1507 Antisense
CCGTATCAAGCACAACTGTCCTAGA 226 265 1523 Antisense
TGAAGAAGGAGCTATCGTCGATGTT 268 575 1668 Antisense
CCAGCTCAGGCGACTTATCCGAAAA 105 273 1697 Antisense
GAAGAATTTGAATATTCCCCGCATC 30 341 1744 Antisense
TCCCCGCATCAGTTAACTCTTGAGC 705 589 1759 Antisense
ATTTGATTTCCTCTATGGCGCAACT 690 15 1793 Antisense
CATTTCCAACGCTATCGCCAAATAA 153 215 1828 Antisense
GTTACGTGCCAGAACTTTTACCTAG 490 445 1877 Antisense
Sequence Source Affymetrix Proprietary Database