[Home] | [Total List]

[187788_at]

Description F13C5.7 /REP_DB=WormBase Gene ID /WP=CE19389 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O76567 protein_id:AAC64616.1
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 15      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_highest_nonorm > 70      6grp_total > 15      4grp_total > 46      6grp_highest_sub > De      6grp_cgc > 32      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 499
1 2 3 4 range
A 722.9
(3)
P 		470.1
(-0.5)
P 		336.3
(-2.3)
P 		286.4
(-3)
P 		437
B 774.3
(3)
P 		436.4
(-1.1)
P 		281.2
(-2.9)
P 		275.4
(-3)
P 		499
C 752.8
(3)
P 		423.8
(-1.3)
P 		295
(-3)
P 		291.4
(-3)
P 		461
avr 750
(3) 		443.4
(-1) 		304.2
(-2.7) 		284.4
(-3) 		466

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 502
1 2 3 4 5 6 range
A 349.8
(-0.5)
P 		587.6
(3)
P 		224.2
(-2.3)
P 		242.4
(-2)
P 		218.8
(-2.4)
P 		176.3
(-3)
P 		411
B 493.1
(3)
P 		406.9
(1.4)
P 		264.7
(-1.2)
P 		193.1
(-2.5)
P 		238.9
(-1.6)
P 		164.3
(-3)
P 		329
C 658.1
(3)
P 		438.3
(0.4)
P 		346.2
(-0.7)
P 		169.1
(-2.8)
P 		271
(-1.6)
P 		155.8
(-3)
P 		502
avr 500.3
(3) 		477.6
(2.6) 		278.4
(-1) 		201.5
(-2.4) 		242.9
(-1.6) 		165.5
(-3) 		335
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 263.2
(3)
P 		102
(-1.4)
P 		87.9
(-1.8)
P 		41.9
(-3)
P 		221
B 246.9
(3)
P 		107.8
(-1.4)
P 		65.1
(-2.8)
P 		58.7
(-3)
P 		188
C 249.2
(3)
P 		121.8
(-0.8)
P 		102.8
(-1.4)
P 		49.1
(-3)
P 		200
avr 253.1
(3) 		110.5
(-1.2) 		85.3
(-2) 		49.9
(-3) 		203

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 64.5
(-2.2)
P 		209
(3)
P 		48.8
(-2.8)
P 		61.5
(-2.3)
P 		66
(-2.2)
P 		42.9
(-3)
P 		166
B 171.6
(3)
P 		135.5
(1.2)
P 		64.3
(-2.3)
P 		51.2
(-3)
P 		97.1
(-0.7)
P 		61.3
(-2.5)
P 		120
C 243.9
(3)
P 		133.7
(-0.2)
P 		88.1
(-1.5)
P 		34
(-3)
P 		87.7
(-1.5)
P 		52.2
(-2.5)
P 		210
avr 160
(3) 		159.4
(3) 		67.1
(-2) 		48.9
(-3) 		83.6
(-1.1) 		52.1
(-2.8) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187788_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18333
Sequence Type Exemplar sequence
Representative Public ID F13C5.7 NCBI
Target Description F13C5.7 /REP_DB=WormBase Gene ID /WP=CE19389 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O76567 protein_id:AAC64616.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171939(11), NM_171612(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171939 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-10) (gei-10) mRNA, complete cds. 11/11 A 
NM_171612 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-10) (gei-10) mRNA, complete cds. 11/11 A 
GENEFINDER00000042508 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:611537:620473:-1 10/11 None
F13C5.6b ENSEMBL cdna:known chromosome:CEL140:X:611132:621290:-1 gene:F13C5.6 11/11 A 
F13C5.6a ENSEMBL cdna:known chromosome:CEL140:X:611266:621278:-1 gene:F13C5.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:616978-621278(-) 100.0 100.0
Public Domain and Genome References
Ensembl F13C5.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL27240 Gex interacting protein protein 10, isoform b [Caenorhabditis elegans] ref|NP_741704.1| GEX Interacting protein family member (gei-10) [Caenorhabditis elegans] 0.0
blast AAC64616 Gex interacting protein protein 10, isoform a [Caenorhabditis elegans] ref|NP_741703.1| GEX Interacting protein family member (gei-10) [Caenorhabditis elegans] 0.0
blast CAE63642 Hypothetical protein CBG08140 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:187788_AT
gtgaatctcaacctggatccggagaaacccaaagttcgatcagttgtgagatcagacagc
ggattggaaaatgagattcctaaaatttccggaacctcatcagcattaatagaagagggg
ttatctctgctcaacctcaaatcttctttgagcccaaatgttgctccagttgccgtagat
ttgttggatagaacgtgcccaagtccagattacgggctgacgtcagagaggctcgctagt
gtgaaaactcccaggttcaaaagaatcgactttgatgacagacttgaggatctaaatcca
aacaagccggcatggaagtcgtggcaggaaaacattaaagactcttatcacaaggtcaaa
gtgagcgcggagaagaagcgagaagataatgagttcatggataatatgatgctaggaaga
gcccgtccaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAATCTCAACCTGGATCCGGAGA 450 481 31 Antisense
TTTCCGGAACCTCATCAGCATTAAT 109 669 116 Antisense
GAAGAGGGGTTATCTCTGCTCAACC 139 339 142 Antisense
CTGCTCAACCTCAAATCTTCTTTGA 31 239 157 Antisense
TTGCTCCAGTTGCCGTAGATTTGTT 89 703 191 Antisense
TAGAACGTGCCCAAGTCCAGATTAC 513 651 219 Antisense
GTCCAGATTACGGGCTGACGTCAGA 64 475 233 Antisense
GACGTCAGAGAGGCTCGCTAGTGTG 699 375 249 Antisense
CGCTAGTGTGAAAACTCCCAGGTTC 314 251 264 Antisense
AAGCCGGCATGGAAGTCGTGGCAGG 391 149 334 Antisense
GATGCTAGGAAGAGCCCGTCCAATT 701 393 438 Antisense
Sequence Source Affymetrix Proprietary Database