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[187787_at]

Description K02D10.1 /REP_DB=WormBase Gene ID /WP=CE17151 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=4-NITROPHENYLPHOSPHATASE
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 61      4grp_highest_8_8 > 40      4grp_high_8_8 > 50      6grp_highest_nonorm > 35      6grp_total > 61      4grp_total > 53      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1621
1 2 3 4 range
A 2926.4
(3)
P 		2694.2
(2.1)
P 		2477.5
(1.3)
P 		1305
(-3)
P 		1621
B 2919.7
(3)
P 		2590.5
(1.6)
P 		2383.2
(0.8)
P 		1459.7
(-3)
P 		1460
C 2799.5
(3)
P 		2469.3
(1.5)
P 		2322
(0.8)
P 		1468.7
(-3)
P 		1331
avr 2881.9
(3) 		2584.7
(1.8) 		2394.2
(1) 		1411.1
(-3) 		1471

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2218
1 2 3 4 5 6 range
A 2218.7
(-3)
P 		3064.5
(-0.7)
P 		3683.5
(1)
P 		4391.3
(3)
P 		2486.1
(-2.3)
P 		2293
(-2.8)
P 		2173
B 2545.3
(-1.4)
P 		2709.2
(-0.7)
P 		3584
(3)
P 		3399.7
(2.2)
P 		2655.5
(-1)
P 		2173.8
(-3)
P 		1410
C 2499.4
(-2.5)
P 		2768.5
(-1.6)
P 		4163.1
(3)
P 		4109.9
(2.8)
P 		2931.2
(-1.1)
P 		2354.1
(-3)
P 		1809
avr 2421.1
(-2.5) 		2847.4
(-1) 		3810.2
(2.4) 		3967
(3) 		2690.9
(-1.5) 		2273.6
(-3) 		1693
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 875
1 2 3 4 range
A 1065.5
(3)
P 		584.8
(-0.3)
P 		647.7
(0.1)
P 		191
(-3)
P 		875
B 931.1
(3)
P 		639.8
(0.2)
P 		552.2
(-0.7)
P 		311.1
(-3)
P 		620
C 926.7
(3)
P 		709.9
(1.1)
P 		809.3
(2)
P 		247.6
(-3)
P 		679
avr 974.4
(3) 		644.8
(0.3) 		669.7
(0.5) 		249.9
(-3) 		725

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 705
1 2 3 4 5 6 range
A 409
(-3)
P 		1089.9
(2.8)
P 		802.2
(0.3)
P 		1113.7
(3)
P 		750.2
(-0.1)
P 		558.3
(-1.7)
P 		705
B 885.6
(-1.3)
P 		901.8
(-1)
P 		870.3
(-1.7)
P 		900.5
(-1)
P 		1078.9
(3)
P 		810.6
(-3)
P 		268
C 926.4
(0.1)
P 		844.7
(-1.7)
P 		1059.6
(3)
P 		826.5
(-2.1)
P 		948.5
(0.5)
P 		788
(-3)
P 		272
avr 740.3
(-2.4) 		945.5
(3) 		910.7
(2) 		946.9
(3) 		925.9
(2.4) 		719
(-3) 		228
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187787_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6070
Sequence Type Exemplar sequence
Representative Public ID K02D10.1 NCBI
Target Description K02D10.1 /REP_DB=WormBase Gene ID /WP=CE17151 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=4-NITROPHENYLPHOSPHATASE
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066535(11), NM_066538(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066535 NCBI Caenorhabditis elegans K02D10.1b (4-NITROPHENYLPHOSPHATASE) mRNA, complete cds. 11/11 None
NM_066538 NCBI Caenorhabditis elegans K02D10.1a (4-NITROPHENYLPHOSPHATASE) mRNA, complete cds. 11/11 None
SNAP00000017001 ENSEMBL cdna:SNAP chromosome:CEL140:III:8773047:8775789:1 11/11 None
GENEFINDER00000017005 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8773047:8775789:1 11/11 None
K02D10.1b.2 ENSEMBL cdna:known chromosome:CEL140:III:8769431:8776033:1 gene:K02D10.1 11/11 None
K02D10.1b.1 ENSEMBL cdna:known chromosome:CEL140:III:8769438:8776042:1 gene:K02D10.1 11/11 None
K02D10.1a ENSEMBL cdna:known chromosome:CEL140:III:8774311:8775789:1 gene:K02D10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8773042-8775785(+) 100.0 100.0
Public Domain and Genome References
Ensembl K02D10.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84537 Hypothetical protein K02D10.1a [Caenorhabditis elegans] 0.0
blast CAE62749 Hypothetical protein CBG06913 [Caenorhabditis briggsae] 0.0
blast AAL06038 Hypothetical protein K02D10.1b [Caenorhabditis elegans] ref|NP_498936.1| K02D10.1b [Caenorhabditis elegans] sp|P34492|YMQ1_CAEEL Putative NipSnap protein K02D10.1 1.0E-171
blast AAK84537 Hypothetical protein K02D10.1a [Caenorhabditis elegans] 1.0E-159
Protein Domains
Database ID Description E-Value
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 1.5E-18
Sequence
Target Sequence 
>C. ELEGANS:187787_AT
actaccgcccaggagagcaggatgcatatttagatgcttttggaaagtataaaaacgaaa
tgaatcaaaagaatccatcaattgaacttgttggatcatggacatgtgcttatggaagaa
ctcgtgatcaggcaattcatctgtggagacataacaaaggttatgaagatgttgattcat
cgatttctcttcatggaaaagattctggaatccgtgcagctgataatgacgttgctaaac
tgtgtggtcgccgcaagaatctcatagtaaaatcattcagctattggagagaaccagaac
aacgaccaccaaatcatgtttatgatcttcgttcatatgttcttcaacctggaactatga
ttgattgggcatctgcatgggcaaaaggaattcaatacagacgtgaggcgaatcaagatg
ttggaggattctttgctcaagttggacaactctatgttgtctatcacatttgggcttatc
catcaatgtcaggccgtaacgatacgagacatgctacttgggcaaagccaggatgggatg
caactgttgcgaatactgtgcctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTACCGCCCAGGAGAGCAGGATGC 699 101 971 Antisense
GAACTCGTGATCAGGCAATTCATCT 343 349 1088 Antisense
GATTCATCGATTTCTCTTCATGGAA 415 431 1144 Antisense
GATTCTGGAATCCGTGCAGCTGATA 222 431 1171 Antisense
CGTTGCTAAACTGTGTGGTCGCCGC 101 247 1200 Antisense
TGTGGTCGCCGCAAGAATCTCATAG 620 555 1213 Antisense
GATTGATTGGGCATCTGCATGGGCA 703 429 1329 Antisense
TGTCTATCACATTTGGGCTTATCCA 588 557 1428 Antisense
GCTTATCCATCAATGTCAGGCCGTA 102 305 1444 Antisense
ACGATACGAGACATGCTACTTGGGC 39 93 1469 Antisense
CAACTGTTGCGAATACTGTGCCTCT 147 189 1511 Antisense
Sequence Source Affymetrix Proprietary Database