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[187785_s_at] transcription factor TFIID like

Description F39H11.6 /REP_DB=WormBase Gene ID /WP=CE23708 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q9U3G4 protein_id:CAB54243.1
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 64      4grp_high_8_8 > 35      6grp_highest_nonorm > 90      6grp_total > 55      4grp_total > 36      6grp_cgc > 56      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 91.5
(-1.3)
P 		148.6
(3)
P 		69.8
(-3)
P 		110.3
(0.1)
A 		79
B 97.3
(2.3)
P 		104.5
(3)
P 		46.7
(-3)
M 		73.6
(-0.2)
P 		58
C 142.4
(3)
P 		79
(-3)
P 		96.3
(-1.4)
P 		110.1
(-0.1)
P 		63
avr 110.4
(3) 		110.7
(3) 		70.9
(-3) 		98
(1.1) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 49.5
(-3)
P 		113.3
(2)
P 		125.6
(3)
P 		78.8
(-0.7)
P 		82
(-0.4)
P 		99.3
(0.9)
P 		76
B 86.4
(-1.7)
P 		95.6
(-0.7)
P 		132.2
(3)
P 		93.8
(-0.9)
P 		73.4
(-3)
P 		116.6
(1.4)
P 		59
C 96.7
(-0.4)
P 		80.1
(-1.4)
P 		103.3
(0)
P 		122.9
(1.3)
P 		55.2
(-3)
P 		150.7
(3)
P 		96
avr 77.5
(-2.2) 		96.3
(0) 		120.4
(2.8) 		98.5
(0.3) 		70.2
(-3) 		122.2
(3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 33.3
(3)
P 		32.3
(2.7)
P 		18.2
(-2.3)
P 		16.1
(-3)
A 		17
B 31
(3)
P 		25.8
(1.5)
P 		10.8
(-3)
M 		15.7
(-1.5)
P 		20
C 47.1
(3)
P 		22.7
(-2.1)
P 		33.6
(0.2)
P 		18.6
(-3)
P 		29
avr 37.1
(3) 		26.9
(-0) 		20.9
(-1.8) 		16.8
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 9.1
(-3)
P 		40.3
(3)
P 		27.3
(0.5)
P 		20
(-0.9)
P 		24.7
(0)
P 		24.2
(-0.1)
P 		31
B 30.1
(-1.3)
P 		31.8
(-0.8)
P 		32.1
(-0.7)
P 		24.9
(-3)
P 		29.8
(-1.4)
P 		43.5
(3)
P 		19
C 35.8
(0.3)
P 		24.5
(-1.8)
P 		26.3
(-1.4)
P 		24.7
(-1.7)
P 		17.9
(-3)
P 		50.4
(3)
P 		33
avr 25
(-2.3) 		32.2
(0.3) 		28.6
(-1) 		23.2
(-3) 		24.1
(-2.7) 		39.4
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187785_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1089
Sequence Type Exemplar sequence
Representative Public ID F39H11.6 NCBI
Target Description F39H11.6 /REP_DB=WormBase Gene ID /WP=CE23708 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q9U3G4 protein_id:CAB54243.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059955(11), AF228692(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059955 NCBI Caenorhabditis elegans TBP-Like Factor family member (tlf-1) (tlf-1) mRNA, complete cds. 11/11 A 
AF228692 NCBI Caenorhabditis elegans TBP-like factor mRNA, complete cds. 11/11 A 
SNAP00000035951 ENSEMBL cdna:SNAP chromosome:CEL140:I:8706441:8710082:-1 11/11 None
GENEFINDER00000035958 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8706441:8710082:-1 11/11 None
F39H11.2 ENSEMBL cdna:known chromosome:CEL140:I:8705652:8710096:-1 gene:F39H11.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8709352-8710013(-) 100.0 100.0
Public Domain and Genome References
Gene Title transcription factor TFIID like
Gene Symbol tlf-1
Ensembl F39H11.2
Entrez Gene 172676 Entrez gene
SwissProt P90869 EMBL-EBI
WormBase CE27159 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604871_AT similar to TATA box binding protein-like protein 1 (TBP-like protein 1) (TATA box binding protein-related factor 2) (TBP-related factor 2) (21-kDa TBP-like protein) cfa
CANINE_2:CFA.19736.1.S1_S_AT similar to TATA box binding protein-like protein 1 (TBP-like protein 1) (TATA box binding protein-related factor 2) (TBP-related factor 2) (21-kDa TBP-like protein) cfa
DROSOPHILA_2:1633231_A_AT TATA box binding protein-related factor 2 dm
DROSGENOME1:144157_S_AT TATA box binding protein-related factor 2 dm
CHICKEN:GGA.4434.1.S1_AT TBP-like 1 gga
CHICKEN:GGA.4434.1.S2_AT TBP-like 1 gga
HG-U133_PLUS_2:208398_S_AT TBP-like 1 hs
HG-U133A:208398_S_AT TBP-like 1 hs
HG-FOCUS:208398_S_AT TBP-like 1 hs
HG-U133A_2:208398_S_AT TBP-like 1 hs
U133_X3P:G4759233_3P_A_AT TBP-like 1 hs
HG-U95AV2:31797_AT TBP-like 1 hs
MG-U74AV2:97893_AT TATA box binding protein-like 1 mm
MU11KSUBB:MSA.24485.0_S_AT TATA box binding protein-like 1 mm
MG-U74BV2:105574_I_AT TATA box binding protein-like 1 mm
MG-U74BV2:105575_F_AT TATA box binding protein-like 1 mm
MOE430A:1431415_A_AT TATA box binding protein-like 1 mm
MOUSE430A_2:1431415_A_AT TATA box binding protein-like 1 mm
MOUSE430_2:1431415_A_AT TATA box binding protein-like 1 mm
MOE430B:1434907_AT TATA box binding protein-like 1 mm
MOUSE430_2:1434907_AT TATA box binding protein-like 1 mm
MG-U74CV2:134123_R_AT TATA box binding protein-like 1, mRNA (cDNA clone MGC:41136 IMAGE:1382180) mm
MG-U74CV2:138755_AT TATA box binding protein-like 1, mRNA (cDNA clone MGC:41136 IMAGE:1382180) mm
MU19KSUBC:TC41366_AT TATA box binding protein-like 1, mRNA (cDNA clone MGC:41136 IMAGE:1382180) mm
RG-U34C:RC_AI232431_AT TATA box binding protein-like 1 (predicted) rn
RAE230A:1373242_AT TATA box binding protein-like 1 (predicted) rn
RAT230_2:1373242_AT TATA box binding protein-like 1 (predicted) rn
RAE230B:1383384_AT TATA box binding protein-like 1 (predicted) rn
RAT230_2:1383384_AT TATA box binding protein-like 1 (predicted) rn
RG-U34B:RC_AA900574_AT TATA box binding protein-like 1 (predicted) rn
RG-U34B:RC_AI012129_AT TATA box binding protein-like 1 (predicted) rn
RG-U34C:RC_AI228170_AT TATA box binding protein-like 1 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
6367 transcription initiation from RNA polymerase II promoter inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
5669 transcription factor TFIID complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3702 RNA polymerase II transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03082 Hypothetical protein F39H11.2 [Caenorhabditis elegans] ref|NP_492356.1| TBP-Like Factor family member (tlf-1) [Caenorhabditis elegans] gb|AAF59926.1| TBP-like factor [Caenorhabditis elegans] 0.0
blast CAB41469 TBP-like factor [Caenorhabditis elegans] 0.0
blast CAB41469 TBP-like factor [Caenorhabditis elegans] 1.0E-165
blast CAB03082 Hypothetical protein F39H11.2 [Caenorhabditis elegans] ref|NP_492356.1| TBP-Like Factor family member (tlf-1) [Caenorhabditis elegans] gb|AAF59926.1| TBP-like factor [Caenorhabditis elegans] 1.0E-139
blast CAE66953 Hypothetical protein CBG12345 [Caenorhabditis briggsae] 1.0E-133
Protein Domains
Database ID Description E-Value
Pfam IPR000814 EMBL-EBI Transcription factor TFIID 3.1E-31
Pfam IPR000814 EMBL-EBI Transcription factor TFIID 6.1E-31
Pfam IPR000814 EMBL-EBI Transcription factor TFIID 2.4E-13
Pfam IPR000814 EMBL-EBI Transcription factor TFIID 1.5E-32
Pfam IPR000814 EMBL-EBI Transcription factor TFIID 3.1E-31
Pfam IPR000814 EMBL-EBI Transcription factor TFIID 2.0E-32
Sequence
Target Sequence 
>C. ELEGANS:187785_S_AT
agtgatgcctgcacaagctggtggtgcagtatcacaaaatgccacgtatgtgcaaacggc
aggaattcgaacggttcatcacgacggaaacggacagcagaggatagttcaactaccccc
gggagtacgtcagattcagcaaaatggtgtcggtcctgcctatgttcgccaagttcctgg
tggtcaaccaatgcaagtaaactttggacatccaggaacgatagcgggtcgaaatgttgc
agttggtgttcaaatgcgacctgtgcaaggacataacgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTGATGCCTGCACAAGCTGGTGGT 145 59 66 Antisense
GCCACGTATGTGCAAACGGCAGGAA 450 279 106 Antisense
ACGGCAGGAATTCGAACGGTTCATC 149 97 121 Antisense
GAACGGTTCATCACGACGGAAACGG 163 143 134 Antisense
CAGAGGATAGTTCAACTACCCCCGG 74 207 163 Antisense
CCCGGGAGTACGTCAGATTCAGCAA 43 261 183 Antisense
AGCAAAATGGTGTCGGTCCTGCCTA 471 73 203 Antisense
GTTCGCCAAGTTCCTGGTGGTCAAC 706 441 229 Antisense
AGCGGGTCGAAATGTTGCAGTTGGT 674 57 288 Antisense
GTTGGTGTTCAAATGCGACCTGTGC 267 437 307 Antisense
GCGACCTGTGCAAGGACATAACGTT 433 289 321 Antisense
Sequence Source Affymetrix Proprietary Database