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[187784_at] 7TM chemoreceptor, srh family

Description M02H5.9 /REP_DB=WormBase Gene ID /WP=CE25956 /GEN=srh-33 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 90      4grp_total > 35      6grp_cgc > 95      6grp_cgc_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 4
(-3)
A 		56.2
(3)
M 		16.8
(-1.5)
A 		6.5
(-2.7)
A 		52
B 41.3
(3)
A 		30
(0.4)
A 		15.2
(-3)
A 		36.3
(1.9)
A 		26
C 24.8
(-3)
A 		57.4
(3)
A 		31
(-1.9)
A 		45.6
(0.8)
A 		33
avr 23.4
(-2.5) 		47.9
(3) 		21
(-3) 		29.5
(-1.1) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 44.3
(3)
A 		9.3
(-3)
A 		35.6
(1.5)
A 		31.8
(0.9)
A 		12.9
(-2.4)
A 		17.4
(-1.6)
A 		35
B 20.9
(-3)
A 		33.2
(-0.1)
A 		26.7
(-1.6)
A 		46.5
(3)
A 		25
(-2)
A 		30.8
(-0.7)
A 		26
C 25.2
(-0.9)
A 		49.1
(3)
A 		12.4
(-3)
A 		38.2
(1.2)
A 		36.6
(1)
A 		19.2
(-1.9)
A 		37
avr 30.1
(-0.2) 		30.5
(-0.1) 		24.9
(-2.1) 		38.8
(3) 		24.8
(-2.2) 		22.5
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 1.5
(-2.7)
A 		12.2
(3)
M 		4.4
(-1.2)
A 		1
(-3)
A 		11
B 13.2
(3)
A 		7.4
(-0.6)
A 		3.5
(-3)
A 		7.7
(-0.4)
A 		10
C 8.2
(-2.7)
A 		16.5
(3)
A 		10.8
(-0.9)
A 		7.7
(-3)
A 		9
avr 7.6
(-1.1) 		12
(3) 		6.2
(-2.4) 		5.5
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 8.2
(3)
A 		3.3
(-3)
A 		7.7
(2.4)
A 		8.1
(2.9)
A 		3.9
(-2.3)
A 		4.2
(-1.9)
A 		5
B 7.3
(-2.2)
A 		11.1
(1.8)
A 		6.5
(-3)
A 		12.3
(3)
A 		10.2
(0.8)
A 		11.5
(2.2)
A 		6
C 9.4
(0.2)
A 		15
(3)
A 		3.2
(-3)
A 		7.7
(-0.7)
A 		11.8
(1.4)
A 		6.4
(-1.4)
A 		12
avr 8.3
(0.8) 		9.8
(3) 		5.8
(-3) 		9.4
(2.4) 		8.6
(1.2) 		7.4
(-0.6) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187784_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15413
Sequence Type Exemplar sequence
Representative Public ID M02H5.9 NCBI
Target Description M02H5.9 /REP_DB=WormBase Gene ID /WP=CE25956 /GEN=srh-33 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070802(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070802 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-33) (srh-33) mRNA, complete cds. 11/11 None
M02H5.9 ENSEMBL cdna:known chromosome:CEL140:V:441649:443122:-1 gene:M02H5.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034161 7/11 Cross Hyb Matching Probes None
GENEFINDER00000034180 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:441648-443122(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-33
Ensembl M02H5.9
Entrez Gene 191852 Entrez gene
SwissProt Q966I5 EMBL-EBI
WormBase CE25956 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503203 Serpentine Receptor, class H family member (srh-33) [Caenorhabditis elegans] gb|AAK84559.1| Serpentine receptor, class h protein 33 [Caenorhabditis elegans] 0.0
blast CAE58260 Hypothetical protein CBG01361 [Caenorhabditis briggsae] 1.0E-113
blast NP_503228 Serpentine Receptor, class H family member (srh-37) [Caenorhabditis elegans] gb|AAC69083.2| Serpentine receptor, class h protein 37 [Caenorhabditis elegans] 1.0E-100
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503203.1 7 20-38,51-73,93-115,136-158,205-227,248-270,280-302
M02H5.9 7 20-38,51-73,93-115,136-158,205-227,248-270,280-302
Sequence
Target Sequence 
>C. ELEGANS:187784_AT
atttacggattttctgcgagctcatgatctacgtgctagtggtcatttttggactctgga
cgattccgacggctatttggagcatccctgatcaaacatcagaaaagcttaaaatttctc
aagatggtcaaccctacccggactgtctttgggacgacaatgtcgtagcggtttttgaca
gtgggtctcaaagtgagcacctcgtatcgattctgacaattttaaattgggtctcgtgtg
gaatagcgatatttgttgccgcgaaaattgcatttttcctacttgcgaaaaggatggtga
acgagtcgaaagccacaaggcggatgaacaaaaagttcaatcagagaactattcttcagg
cattcatctttttattcttctcgtgtgtcccttttacagtactgcatctcactataatat
ttggtctttacataccaggaatcacttatttcatagatattttctctgaaaatcacccaa
ccgcttgtgtagtcgccttatttctgttttatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTACGGATTTTCTGCGAGCTCAT 300 15 407 Antisense
GCGAGCTCATGATCTACGTGCTAGT 600 289 422 Antisense
TTTGGACTCTGGACGATTCCGACGG 254 667 454 Antisense
TTCCGACGGCTATTTGGAGCATCCC 420 699 470 Antisense
TTCTCAAGATGGTCAACCCTACCCG 332 689 522 Antisense
TACCCGGACTGTCTTTGGGACGACA 706 411 541 Antisense
GAGCACCTCGTATCGATTCTGACAA 14 391 601 Antisense
AGGCATTCATCTTTTTATTCTTCTC 196 55 764 Antisense
GTCCCTTTTACAGTACTGCATCTCA 474 475 793 Antisense
AAATCACCCAACCGCTTGTGTAGTC 370 115 876 Antisense
GTAGTCGCCTTATTTCTGTTTTATG 176 457 895 Antisense
Sequence Source Affymetrix Proprietary Database