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[187783_s_at]

Description ZC477.8 /REP_DB=WormBase Gene ID /WP=CE05064 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q23348 protein_id:AAA81511.1
Cluster 6grp_total > 54      4grp_total > 22      6grp_cgc > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 34.2
(3)
A 		25.6
(0.7)
A 		11.7
(-3)
A 		30.7
(2.1)
A 		23
B 59.9
(3)
A 		7.2
(-3)
A 		17.3
(-1.9)
A 		41.4
(0.9)
A 		53
C 38.2
(1.6)
A 		28
(-0.2)
A 		12.4
(-3)
A 		46
(3)
A 		34
avr 44.1
(3) 		20.3
(-1.7) 		13.8
(-3) 		39.4
(2.1) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 14.3
(-2.4)
A 		26.7
(1)
A 		33.9
(3)
A 		18.5
(-1.2)
A 		12.1
(-3)
A 		27.5
(1.2)
A 		22
B 13.9
(-2.1)
A 		7.5
(-2.9)
A 		58.6
(3)
A 		7.9
(-2.8)
A 		6.3
(-3)
A 		39.4
(0.8)
A 		52
C 9.6
(-2.6)
A 		18.7
(1.2)
A 		22.9
(3)
A 		8.7
(-3)
A 		9.1
(-2.8)
A 		10.9
(-2.1)
A 		14
avr 12.6
(-2.3) 		17.6
(-1.3) 		38.5
(3) 		11.7
(-2.5) 		9.2
(-3) 		25.9
(0.4) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 12.5
(3)
A 		5.5
(-1.5)
A 		3.1
(-3)
A 		4.5
(-2.1)
A 		9
B 19.1
(3)
A 		1.8
(-3)
A 		4
(-2.2)
A 		8.8
(-0.6)
A 		17
C 12.7
(3)
A 		8.1
(-0.3)
A 		4.3
(-3)
A 		7.8
(-0.5)
A 		8
avr 14.8
(3) 		5.1
(-2.3) 		3.8
(-3) 		7
(-1.3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.6
(-3)
A 		9.5
(3)
A 		7.4
(1.2)
A 		4.7
(-1.2)
A 		3.7
(-2)
A 		6.7
(0.6)
A 		7
B 4.8
(-1.7)
A 		2.5
(-2.8)
A 		14.2
(2.8)
A 		2.1
(-3)
A 		2.6
(-2.8)
A 		14.7
(3)
A 		13
C 3.5
(-0.5)
A 		5.7
(2.9)
A 		5.8
(3)
A 		1.8
(-3)
A 		3
(-1.2)
A 		3.6
(-0.3)
A 		4
avr 3.6
(-2.3) 		5.9
(-0.1) 		9.1
(3) 		2.9
(-3) 		3.1
(-2.8) 		8.3
(2.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187783_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9776
Sequence Type Exemplar sequence
Representative Public ID ZC477.8 NCBI
Target Description ZC477.8 /REP_DB=WormBase Gene ID /WP=CE05064 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q23348 protein_id:AAA81511.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) ZC477.8
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
ZC477.8 ZC477.8 /REP_DB=WormBase Gene ID /WP=CE05064 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q23348 protein_id:AAA81511.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068303 11/11 Negative Strand Matching Probes A 
NM_068712 11/11 Negative Strand Matching Probes A 
SNAP00000000752 11/11 Negative Strand Matching Probes None
GENEFINDER00000000757 11/11 Negative Strand Matching Probes None
SNAP00000039651 11/11 Negative Strand Matching Probes None
GENEFINDER00000039664 11/11 Negative Strand Matching Probes None
T28H11.1 11/11 Negative Strand Matching Probes R A 
ZC477.1 11/11 Negative Strand Matching Probes R A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7111912-7112946(-) 100.0 100.0
chrIV:5016796-5017831(-) 93.79 96.89
Sequence
Target Sequence 
>C. ELEGANS:187783_S_AT
cacctcccattgcagtcatggtactagctcctcctggagcacctccgacggctgtcatgg
tcgagacaccacgtggtgctcctcccacagcagtcattgtcgaagatccaccaattggtg
ctccgccaaccgcagtcatcgtggatgaccctcccattggtgcaccaccgacagctgtca
ttgttgatgctccacgtggggctcctccaattgcggtcatggtagacgctccggatggag
ctccgccaacagcagtcatggtggaagctccagatggcgctcctccaactgcagtcattg
ttgatcctcctcccattggggctccaccgacagctgtcatcgttgatgctccacgaggtg
ctcctccgatagcggtcatggttgaagctcccgatggcgctccaccaactgcagtcattg
tgcttgatcctccaacaggggctccaccaacagccgtcatggttgatgctccgcgaggag
ctcctccgacagcagtcatagtcgaagaccctccagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCTCCCATTGCAGTCATGGTACT 325 201 278 Antisense
ATTGCAGTCATGGTACTAGCTCCTC 120 7 286 Antisense
CTCCCACAGCAGTCATTGTCGAAGA 386 233 359 Antisense
AAGATCCACCAATTGGTGCTCCGCC 375 155 380 Antisense
CACCACCGACAGCTGTCATTGTTGA 9 203 440 Antisense
GCTCCTCCAATTGCGGTCATGGTAG 303 299 478 Antisense
CTCCTCCGATAGCGGTCATGGTTGA 327 231 638 Antisense
GCTCCACCAACTGCAGTCATTGTGC 196 299 676 Antisense
ACTGCAGTCATTGTGCTTGATCCTC 63 99 685 Antisense
AACAGCCGTCATGGTTGATGCTCCG 244 137 726 Antisense
CAGTCATAGTCGAAGACCCTCCAGC 329 207 770 Antisense
Sequence Source Affymetrix Proprietary Database