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[187782_s_at]

Description E03D2.2 /REP_DB=WormBase Gene ID /WP=CE16959 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O44539 protein_id:AAB94167.1
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 99      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 78      6grp_total > 89      4grp_total > 03      6grp_highest_sub > In      6grp_cgc > 79      6grp_cgc_sub > Da      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3634
1 2 3 4 range
A 1316.2
(-2.4)
P 		1388.8
(-2.3)
P 		946.6
(-3)
P 		4485.1
(3)
P 		3539
B 1771.2
(-1.1)
P 		1233.6
(-2.2)
P 		851.6
(-3)
P 		3691.2
(3)
P 		2840
C 1619.1
(-2.4)
P 		1399.6
(-3)
P 		1489.5
(-2.7)
P 		3498.4
(3)
P 		2099
avr 1568.8
(-2) 		1340.7
(-2.5) 		1095.9
(-3) 		3891.6
(3) 		2796

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 938
1 2 3 4 5 6 range
A 1374.3
(0.5)
P 		1417.8
(1.1)
P 		1182.5
(-2.5)
P 		1147.3
(-3)
P 		1538.8
(3)
P 		1534
(2.9)
P 		392
B 1205.6
(-3)
P 		1641.2
(0)
P 		1245.8
(-2.7)
P 		1378.4
(-1.8)
P 		2018.1
(2.6)
P 		2072.3
(3)
P 		867
C 1134.5
(-3)
P 		1498.5
(1.9)
P 		1312
(-0.6)
P 		1578
(3)
P 		1371.5
(0.2)
P 		1506.7
(2)
P 		444
avr 1238.1
(-3) 		1519.2
(0.6) 		1246.8
(-2.9) 		1367.9
(-1.3) 		1642.8
(2.2) 		1704.3
(3) 		466
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 589
1 2 3 4 range
A 479.2
(0.4)
P 		301.5
(-2.2)
P 		247.5
(-3)
P 		656.5
(3)
P 		409
B 564.8
(0.7)
P 		304.7
(-1.9)
P 		197.3
(-3)
P 		786.6
(3)
P 		589
C 536
(1.3)
P 		402.4
(-3)
P 		519.1
(0.7)
P 		589.9
(3)
P 		188
avr 526.7
(0.5) 		336.2
(-2.7) 		321.3
(-3) 		677.7
(3) 		356

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 567
1 2 3 4 5 6 range
A 253.3
(-3)
P 		504.2
(3)
P 		257.5
(-2.9)
P 		291
(-2.1)
P 		464.3
(2)
P 		373.5
(-0.1)
P 		251
B 419.5
(-1.6)
P 		546.3
(-0.2)
P 		302.5
(-3)
P 		365.1
(-2.3)
P 		819.9
(3)
P 		772.8
(2.5)
P 		517
C 420.5
(0.3)
P 		457.2
(1.5)
P 		333.9
(-2.5)
P 		317.3
(-3)
P 		443.8
(1.1)
P 		504.4
(3)
P 		187
avr 364.4
(-1.6) 		502.6
(1.4) 		298
(-3) 		324.5
(-2.4) 		576
(3) 		550.2
(2.4) 		278
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187782_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15370
Sequence Type Exemplar sequence
Representative Public ID E03D2.2 NCBI
Target Description E03D2.2 /REP_DB=WormBase Gene ID /WP=CE16959 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O44539 protein_id:AAB94167.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071767(11), NM_071768(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071767 NCBI Caenorhabditis elegans Neuropeptide-Like Protein family member (nlp-9) (nlp-9) mRNA, complete cds. 11/11 None
NM_071768 NCBI Caenorhabditis elegans Neuropeptide-Like Protein family member (nlp-9) (nlp-9) mRNA, complete cds. 10/11 None
SNAP00000024578 ENSEMBL cdna:SNAP chromosome:CEL140:V:4219481:4221713:1 11/11 None
GENEFINDER00000024583 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4219481:4221151:1 10/11 None
E03D2.2a ENSEMBL cdna:known chromosome:CEL140:V:4219457:4221998:1 gene:E03D2.2 11/11 A 
E03D2.2b ENSEMBL cdna:known chromosome:CEL140:V:4219481:4221943:1 gene:E03D2.2 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4219480-4221713(+) 100.0 100.0
Public Domain and Genome References
Ensembl E03D2.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94167 Neuropeptide-like protein protein 9, isoform a [Caenorhabditis elegans] ref|NP_504168.1| Neuropeptide-Like Protein family member (nlp-9) [Caenorhabditis elegans] 3.0E-71
blast AAK68290 Neuropeptide-like protein protein 9, isoform b [Caenorhabditis elegans] ref|NP_504169.1| Neuropeptide-Like Protein family member (nlp-9) [Caenorhabditis elegans] 4.0E-62
blast AAK68290 Neuropeptide-like protein protein 9, isoform b [Caenorhabditis elegans] ref|NP_504169.1| Neuropeptide-Like Protein family member (nlp-9) [Caenorhabditis elegans] 2.0E-59
blast AAK68290 Neuropeptide-like protein protein 9, isoform b [Caenorhabditis elegans] ref|NP_504169.1| Neuropeptide-Like Protein family member (nlp-9) [Caenorhabditis elegans] 3.0E-59
blast AAB94167 Neuropeptide-like protein protein 9, isoform a [Caenorhabditis elegans] ref|NP_504168.1| Neuropeptide-Like Protein family member (nlp-9) [Caenorhabditis elegans] 3.0E-59
Sequence
Target Sequence 
>C. ELEGANS:187782_S_AT
tcgattcgccaccagatttatcgcccttcttctggttcttttacaaattgggtccatctt
cgccacaccaattgcagaggctcagggagcaccagaagacgtagatgatagacgagagct
agagaaacgcggaggagctcgagcgttttatgggttctacaacgcgggcaattcgaaaag
ggaccaagctgccgccctaccgtactatttgtacgagaaacgaggaggtggacgcgcttt
taatcacaacgccaatttattcaggtttgacaaaagaggaggaggacgagccttcgctgg
atcatggtccccgtacttggaacgattctacgactacaaacgctcatcgtaccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGATTCGCCACCAGATTTATCGCC 246 603 18 Antisense
TACAAATTGGGTCCATCTTCGCCAC 549 641 59 Antisense
TCTTCGCCACACCAATTGCAGAGGC 62 617 74 Antisense
GGCTCAGGGAGCACCAGAAGACGTA 669 537 96 Antisense
GGAGCTCGAGCGTTTTATGGGTTCT 602 519 151 Antisense
TATGGGTTCTACAACGCGGGCAATT 165 651 166 Antisense
TTCGAAAAGGGACCAAGCTGCCGCC 540 687 189 Antisense
GCCGCCCTACCGTACTATTTGTACG 123 285 208 Antisense
GAAACGAGGAGGTGGACGCGCTTTT 418 357 234 Antisense
GACGCGCTTTTAATCACAACGCCAA 181 381 248 Antisense
ACGACTACAAACGCTCATCGTACCC 54 55 347 Antisense
Sequence Source Affymetrix Proprietary Database