[Home] | [Total List]

[187780_at]

Description W07B8.2 /REP_DB=WormBase Gene ID /WP=CE14676 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O16287 protein_id:AAB65344.1
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 15      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 50      6grp_total > 15      4grp_total > 46      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 882
1 2 3 4 range
A 1133.9
(3)
P 		504.5
(-1.8)
P 		344.3
(-3)
P 		411.1
(-2.5)
P 		790
B 1080.9
(3)
P 		581.7
(-1.3)
P 		383.5
(-3)
P 		403.4
(-2.8)
P 		697
C 1173.2
(3)
P 		621.8
(-0.8)
P 		381.7
(-2.4)
P 		291
(-3)
P 		882
avr 1129.3
(3) 		569.3
(-1.4) 		369.8
(-3) 		368.5
(-3) 		761

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 742
1 2 3 4 5 6 range
A 758
(1.7)
P 		916.1
(3)
P 		356.9
(-1.5)
P 		321.1
(-1.8)
P 		305.5
(-1.9)
P 		174
(-3)
P 		742
B 750.9
(3)
P 		718.6
(2.7)
P 		493.1
(0.2)
P 		250.5
(-2.4)
P 		321
(-1.6)
P 		190.8
(-3)
P 		560
C 900.8
(3)
P 		668
(1)
P 		458.6
(-0.8)
P 		344
(-1.8)
P 		378.6
(-1.5)
P 		208.3
(-3)
P 		693
avr 803.2
(3) 		767.6
(2.7) 		436.2
(-0.6) 		305.2
(-1.9) 		335
(-1.6) 		191
(-3) 		612
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 364
1 2 3 4 range
A 412.8
(3)
P 		109.5
(-2.2)
P 		90
(-2.5)
P 		60.2
(-3)
P 		353
B 344.7
(3)
P 		143.7
(-1.7)
P 		88.9
(-2.9)
P 		86
(-3)
P 		259
C 388.4
(3)
P 		178.8
(-0.7)
P 		133
(-1.5)
P 		49.1
(-3)
P 		339
avr 382
(3) 		144
(-1.5) 		104
(-2.3) 		65.1
(-3) 		317

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 292
1 2 3 4 5 6 range
A 139.7
(-0.9)
P 		325.8
(3)
P 		77.7
(-2.3)
P 		81.4
(-2.2)
P 		92.2
(-1.9)
P 		42.4
(-3)
P 		283
B 261.3
(3)
P 		239.2
(2.3)
P 		119.7
(-1.4)
P 		66.3
(-3)
P 		130.4
(-1)
P 		71.1
(-2.9)
P 		195
C 333.9
(3)
P 		203.8
(0.1)
P 		116.7
(-1.9)
P 		69.2
(-3)
P 		122.5
(-1.8)
P 		69.7
(-3)
P 		265
avr 245
(2.7) 		256.3
(3) 		104.7
(-1.7) 		72.3
(-2.7) 		115
(-1.3) 		61.1
(-3) 		195
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187780_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15063
Sequence Type Exemplar sequence
Representative Public ID W07B8.2 NCBI
Target Description W07B8.2 /REP_DB=WormBase Gene ID /WP=CE14676 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O16287 protein_id:AAB65344.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070980(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070980 NCBI Caenorhabditis elegans W07B8.3 (W07B8.3) mRNA, complete cds. 11/11 A 
GENEFINDER00000016198 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1121882:1128940:1 11/11 None
W07B8.3 ENSEMBL cdna:known chromosome:CEL140:V:1121882:1129122:1 gene:W07B8.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1126911-1128940(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W07B8.3
Entrez Gene 178610 Entrez gene
SwissProt O16286 EMBL-EBI
WormBase CE28510 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65347 Hypothetical protein W07B8.3 [Caenorhabditis elegans] ref|NP_503381.1| W07B8.3 [Caenorhabditis elegans] 1.0E-111
blast CAE58031 Hypothetical protein CBG01105 [Caenorhabditis briggsae] 1.0E-103
Sequence
Target Sequence 
>C. ELEGANS:187780_AT
taccgccatcatccacagcagatgacacgtgccatgtctccaccgccaatgtcgaccaca
accggcagcacacattctccgccgttgcgtcaaattggagaaaccgtcaaaaccacgtat
agtcacagcggaagttacggaggcttgtatccgggtggctacaagggatacccgtatggt
ggtggctactcgaatagcattctctacggaatgccgccacataatggcatgctttggaga
ttcctcgccaacccattccctttcggaaacgctcaaaccagatctttcatcggacctaac
aaatatcaccatttcggaggctaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACCGCCATCATCCACAGCAGATGA 577 643 61 Antisense
AGCAGATGACACGTGCCATGTCTCC 25 79 77 Antisense
AACCACGTATAGTCACAGCGGAAGT 567 145 171 Antisense
CGGAGGCTTGTATCCGGGTGGCTAC 299 239 198 Antisense
GATACCCGTATGGTGGTGGCTACTC 237 423 227 Antisense
GGCTACTCGAATAGCATTCTCTACG 515 537 244 Antisense
TTCTCTACGGAATGCCGCCACATAA 679 689 260 Antisense
CATGCTTTGGAGATTCCTCGCCAAC 643 209 288 Antisense
CCTTTCGGAAACGCTCAAACCAGAT 495 1 319 Antisense
AAACCAGATCTTTCATCGGACCTAA 150 125 335 Antisense
AAATATCACCATTTCGGAGGCTACA 706 115 361 Antisense
Sequence Source Affymetrix Proprietary Database