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[187779_s_at]

Description T12C9.4 /REP_DB=WormBase Gene ID /WP=CE04936 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q22427 protein_id:AAC71142.1
Cluster 6grp_total > 87      4grp_total > 03      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 32.6
(-2.5)
A 		27.7
(-2.9)
A 		26.6
(-3)
A 		99.2
(3)
A 		73
B 41.8
(-1.2)
A 		43.4
(-0.9)
A 		31.5
(-3)
A 		65.6
(3)
A 		34
C 40.8
(-2.1)
A 		29.2
(-3)
A 		41.3
(-2.1)
A 		106.2
(3)
P 		77
avr 38.4
(-2.4) 		33.4
(-3) 		33.1
(-3) 		90.3
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 214
1 2 3 4 5 6 range
A 20.9
(-3)
A 		39.5
(-2.5)
A 		33.9
(-2.6)
A 		73.7
(-1.5)
A 		144.7
(0.5)
P 		234.5
(3)
P 		214
B 43.8
(-2.5)
P 		27.7
(-3)
A 		29.6
(-2.9)
A 		71.4
(-1.5)
P 		119.8
(0.1)
P 		204.9
(3)
P 		177
C 36.8
(-3)
A 		37.7
(-3)
A 		52.2
(-2.4)
A 		65.5
(-2)
A 		96.1
(-0.9)
P 		203.6
(3)
P 		167
avr 33.8
(-3) 		35
(-3) 		38.6
(-2.8) 		70.2
(-1.8) 		120.2
(-0.1) 		214.3
(3) 		181
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 11.9
(1.2)
A 		6
(-3)
A 		6.9
(-2.4)
A 		14.5
(3)
A 		9
B 13.3
(2.4)
A 		10.7
(0)
A 		7.3
(-3)
A 		14
(3)
A 		7
C 13.5
(0.2)
A 		8.4
(-3)
A 		14.4
(0.8)
A 		17.9
(3)
P 		10
avr 12.9
(0.8) 		8.4
(-3) 		9.5
(-2.1) 		15.5
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 3.8
(-3)
A 		14
(-1.9)
A 		7.4
(-2.6)
A 		18.7
(-1.3)
A 		43.7
(1.5)
P 		57.1
(3)
P 		53
B 15.3
(-2.3)
P 		9.2
(-2.8)
A 		7.2
(-3)
A 		18.9
(-2)
P 		48.7
(0.6)
P 		76.4
(3)
P 		69
C 13.6
(-2.8)
A 		11.5
(-3)
A 		13.3
(-2.8)
A 		13.2
(-2.8)
A 		31.1
(-0.9)
P 		68.2
(3)
P 		57
avr 10.9
(-2.8) 		11.6
(-2.8) 		9.3
(-3) 		16.9
(-2.2) 		41.2
(0.3) 		67.2
(3) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187779_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4882
Sequence Type Exemplar sequence
Representative Public ID T12C9.4 NCBI
Target Description T12C9.4 /REP_DB=WormBase Gene ID /WP=CE04936 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q22427 protein_id:AAC71142.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062386
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000005699 ENSEMBL cdna:SNAP chromosome:CEL140:II:4458419:4460257:-1 11/11 None
GENEFINDER00000005701 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4458419:4460341:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062386 5/11 Cross Hyb Matching Probes None
T12C9.7 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4458417-4461348(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast A88125 protein T12C9.4 [imported] - Caenorhabditis elegans 0.0
blast A88125 protein T12C9.4 [imported] - Caenorhabditis elegans 1.0E-152
blast AAK77633 Hypothetical protein T12C9.7 [Caenorhabditis elegans] ref|NP_494787.1| T12C9.7 [Caenorhabditis elegans] 1.0E-108
blast AAK77633 Hypothetical protein T12C9.7 [Caenorhabditis elegans] ref|NP_494787.1| T12C9.7 [Caenorhabditis elegans] 2.0E-72
blast CAE72817 Hypothetical protein CBG20098 [Caenorhabditis briggsae] 6.0E-64
blast CAE72817 Hypothetical protein CBG20098 [Caenorhabditis briggsae] 1.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR006671 EMBL-EBI Cyclin, N-terminal domain 2.2E-7
Pfam IPR006671 EMBL-EBI Cyclin, N-terminal domain 1.5E-7
Sequence
Target Sequence 
>C. ELEGANS:187779_S_AT
tggatgaactggcagcggtcaccttggttattgccagcaaactcgaagacgtaaattgtc
tgacaattgagaatataattggcgttgagttgatagaaaaatccgcggcgcagatggcag
ctcttgagagattcgttctgacatcattatcattcaaaatcacaattccgacgccgcttc
atttttccacttatatgctcgtttatctatcggcgtcaccggcgaaaattcacctaactt
attacctcctggaattatcgattttgtacgtccacaaccgccgttttccatccgacgtcg
tcgccaacgccgccacgtgcctggcttttgccattgattctgaaccgtccgtagatcaaa
ctccgtcgacagttctccgcgaaacggagctcagattacgcgatttcactggaaaaaatg
tgaaagatgagtgggatcgggaacgcgaagttatgctgacattgatagatttatttctgg
ttgccggcgatgaaaatcacgatatttatcgcgaatactgcacatctcgtcgaaactacg
tagcacttcggcagagtgtcccggaactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGATGAACTGGCAGCGGTCACCTT 487 549 593 Antisense
CGGTCACCTTGGTTATTGCCAGCAA 467 243 608 Antisense
AAAATCCGCGGCGCAGATGGCAGCT 307 133 690 Antisense
CCGCTTCATTTTTCCACTTATATGC 377 263 766 Antisense
TATGCTCGTTTATCTATCGGCGTCA 462 655 786 Antisense
GTCACCGGCGAAAATTCACCTAACT 702 463 807 Antisense
CGTCCGTAGATCAAACTCCGTCGAC 668 245 938 Antisense
GGAGCTCAGATTACGCGATTTCACT 515 521 978 Antisense
AATACTGCACATCTCGTCGAAACTA 348 171 1106 Antisense
GAAACTACGTAGCACTTCGGCAGAG 239 357 1124 Antisense
ACTTCGGCAGAGTGTCCCGGAACTT 127 103 1137 Antisense
Sequence Source Affymetrix Proprietary Database