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[187778_at]

Description C09D4.4 /REP_DB=WormBase Gene ID /WP=CE08033 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O01731 protein_id:AAB53981.1
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 67      6grp_highest_nonorm > 82      6grp_total > 59      4grp_total > 31      6grp_highest_sub > Cu      6grp_high1_sub > Da      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 340
1 2 3 4 range
A 456.2
(3)
P 		171.3
(-2)
A 		116.1
(-3)
A 		196.6
(-1.6)
P 		340
B 314.1
(3)
P 		127.7
(-3)
A 		147.4
(-2.4)
M 		272.5
(1.7)
P 		186
C 369.1
(3)
P 		179.1
(-3)
A 		207.4
(-2.1)
P 		246.9
(-0.9)
P 		190
avr 379.8
(3) 		159.4
(-2.9) 		157
(-3) 		238.7
(-0.8) 		223

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 328
1 2 3 4 5 6 range
A 327.2
(-1)
P 		387.1
(0.1)
P 		221.9
(-3)
P 		354.9
(-0.5)
P 		336
(-0.9)
P 		542.8
(3)
P 		321
B 254.1
(-1.1)
P 		214.9
(-3)
P 		241.7
(-1.7)
P 		340.2
(3)
P 		244.9
(-1.6)
P 		312.4
(1.7)
P 		125
C 534.5
(3)
P 		265.2
(-3)
P 		424.8
(0.6)
P 		395.4
(-0.1)
P 		435.1
(0.8)
P 		511.1
(2.5)
P 		269
avr 371.9
(-0) 		289.1
(-3) 		296.1
(-2.7) 		363.5
(-0.3) 		338.7
(-1.2) 		455.4
(3) 		166
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 166.1
(3)
P 		37.2
(-2.6)
A 		30.4
(-2.9)
A 		28.8
(-3)
P 		137
B 100.2
(3)
P 		31.5
(-3)
A 		34.2
(-2.8)
M 		58.1
(-0.7)
P 		69
C 122.2
(3)
P 		51.5
(-2.3)
A 		72.3
(-0.7)
P 		41.6
(-3)
P 		81
avr 129.5
(3) 		40.1
(-3) 		45.6
(-2.6) 		42.8
(-2.8) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 60.3
(-2.2)
P 		137.7
(3)
P 		48.3
(-3)
P 		90
(-0.2)
P 		101.4
(0.6)
P 		132.2
(2.6)
P 		89
B 88.4
(0.1)
P 		71.5
(-1.7)
P 		58.7
(-3)
P 		90.1
(0.3)
P 		99.5
(1.2)
P 		116.5
(3)
P 		58
C 198.1
(3)
P 		80.9
(-2.9)
P 		108.1
(-1.6)
P 		79.5
(-3)
P 		140.8
(0.1)
P 		171.1
(1.6)
P 		119
avr 115.6
(0.9) 		96.7
(-0.8) 		71.7
(-3) 		86.5
(-1.7) 		113.9
(0.7) 		139.9
(3) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187778_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.709
Sequence Type Exemplar sequence
Representative Public ID C09D4.4 NCBI
Target Description C09D4.4 /REP_DB=WormBase Gene ID /WP=CE08033 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O01731 protein_id:AAB53981.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059204(11), NM_059205(11), NM_059206(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059204 NCBI Caenorhabditis elegans C09D4.4c (C09D4.4) mRNA, complete cds. 11/11 None
NM_059205 NCBI Caenorhabditis elegans C09D4.4b (C09D4.4) mRNA, complete cds. 11/11 None
NM_059206 NCBI Caenorhabditis elegans C09D4.4a (C09D4.4) mRNA, complete cds. 11/11 None
GENEFINDER00000041672 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5479946:5484646:-1 11/11 None
SNAP00000041666 ENSEMBL cdna:SNAP chromosome:CEL140:I:5480214:5486516:-1 10/11 None
C09D4.4c ENSEMBL cdna:known chromosome:CEL140:I:5479553:5484646:-1 gene:C09D4.4 11/11 A 
C09D4.4a ENSEMBL cdna:known chromosome:CEL140:I:5479946:5484646:-1 gene:C09D4.4 11/11 None
C09D4.4b ENSEMBL cdna:known chromosome:CEL140:I:5479946:5484646:-1 gene:C09D4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5479945-5484646(-) 100.0 100.0
Public Domain and Genome References
Ensembl C09D4.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP68957 Hypothetical protein C09D4.4c [Caenorhabditis elegans] ref|NP_491605.2| C09D4.4c [Caenorhabditis elegans] 0.0
blast AAP68955 Hypothetical protein C09D4.4a [Caenorhabditis elegans] ref|NP_491607.2| C09D4.4a [Caenorhabditis elegans] 0.0
blast AAP68956 Hypothetical protein C09D4.4b [Caenorhabditis elegans] ref|NP_491606.2| C09D4.4b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007751 EMBL-EBI Protein of unknown function DUF676 1.8E-96
Pfam IPR007751 EMBL-EBI Protein of unknown function DUF676 1.8E-96
Pfam IPR007751 EMBL-EBI Protein of unknown function DUF676 1.8E-96
Pfam IPR007751 EMBL-EBI Protein of unknown function DUF676 1.8E-96
Pfam IPR000196 EMBL-EBI Ribosomal protein L19e 2.1E-90
Pfam IPR007751 EMBL-EBI Protein of unknown function DUF676 1.8E-96
Sequence
Target Sequence 
>C. ELEGANS:187778_AT
tcttggcccattctctgggtggagtgatcgtccgaagtgctgttggcttggctccagaag
ttgagatgcaatggatgattgatagatgttatacacttatgactatcaattcaccacatc
ttggactagcctatgttcagaaacatattcattggggtgtacagtttgtcaagtggtgga
aaaagtctcgttcaatggaacaattatcgttccgtgattctgttgatttcgcatcgtctt
ttgtttataaaacctctctgaacaatgcatgtgggaagtttaagaatattctgctagtcg
gaacacctcatgatcaacttgttccctacatgtcttctctgttggttccttcaaagattt
cttccgaagatcagtcacaatttggagaggcctatagagaaatgatgacagcctgtctga
gttcaattcaaaacagtgaaaaaagtgagaatctcgtccgttacactacattccatcaac
tcggatcctcgaacactcaaaaaatcactggaagagctgctcacgtcatcgccctggaag
attcggtat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTGGCCCATTCTCTGGGTGGAGT 425 615 2153 Antisense
GTGATCGTCCGAAGTGCTGTTGGCT 208 485 2176 Antisense
TGCTGTTGGCTTGGCTCCAGAAGTT 391 577 2190 Antisense
TCACCACATCTTGGACTAGCCTATG 117 625 2263 Antisense
GTTCCGTGATTCTGTTGATTTCGCA 532 441 2361 Antisense
GATTTCGCATCGTCTTTTGTTTATA 706 427 2377 Antisense
TCTGCTAGTCGGAACACCTCATGAT 546 607 2442 Antisense
ACCTCATGATCAACTTGTTCCCTAC 636 87 2457 Antisense
GAATCTCGTCCGTTACACTACATTC 295 329 2601 Antisense
CTACATTCCATCAACTCGGATCCTC 309 225 2618 Antisense
GTCATCGCCCTGGAAGATTCGGTAT 698 465 2677 Antisense
Sequence Source Affymetrix Proprietary Database