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[187774_s_at]

Description ZK1290.11 /REP_DB=WormBase Gene ID /WP=CE02081 /TR=SW:Q09338 /GB=AAB93317.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 20      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 1.5
(-3)
A 		3.1
(-2.7)
A 		2.7
(-2.8)
A 		30.4
(3)
A 		29
B 28.5
(3)
A 		14.8
(-0.2)
A 		10.2
(-1.2)
A 		2.6
(-3)
A 		26
C 4
(-2.7)
A 		14.6
(-1.2)
A 		1.8
(-3)
A 		44.9
(3)
P 		43
avr 11.3
(-1.2) 		10.8
(-1.3) 		4.9
(-3) 		26
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 23.4
(-0.2)
A 		7.1
(-3)
A 		41.5
(3)
P 		13.9
(-1.8)
A 		15.8
(-1.5)
A 		16.2
(-1.4)
A 		34
B 14.5
(-0.4)
A 		29.2
(3)
A 		11.3
(-1.1)
A 		20.9
(1.1)
A 		7.6
(-2)
A 		3.3
(-3)
A 		26
C 12.7
(-0.8)
A 		27
(2.5)
A 		3
(-3)
A 		12.1
(-0.9)
A 		29.4
(3)
A 		8.9
(-1.7)
A 		26
avr 16.9
(0.8) 		21.1
(3) 		18.6
(1.7) 		15.6
(0.2) 		17.6
(1.2) 		9.5
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.6
(-3)
A 		0.7
(-2.8)
A 		0.7
(-2.8)
A 		4.5
(3)
A 		4
B 9.1
(3)
A 		3.6
(-0.9)
A 		2.4
(-1.7)
A 		0.6
(-3)
A 		9
C 1.3
(-2.4)
A 		4.2
(0.1)
A 		0.6
(-3)
A 		7.6
(3)
P 		7
avr 3.7
(2) 		2.8
(0.2) 		1.2
(-3) 		4.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 4.3
(-1.3)
A 		2.5
(-3)
A 		9
(3)
P 		3.5
(-2.1)
A 		4.8
(-0.9)
A 		4
(-1.6)
A 		7
B 5
(-0.3)
A 		9.7
(3)
A 		2.8
(-1.9)
A 		5.5
(0)
A 		3.1
(-1.7)
A 		1.2
(-3)
A 		9
C 4.7
(-0.3)
A 		8.2
(2.1)
A 		0.8
(-3)
A 		2.4
(-1.9)
A 		9.5
(3)
A 		3
(-1.5)
A 		9
avr 4.7
(-0.1) 		6.8
(3) 		4.2
(-0.8) 		3.8
(-1.4) 		5.8
(1.5) 		2.7
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187774_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4649
Sequence Type Exemplar sequence
Representative Public ID ZK1290.11 NCBI
Target Description ZK1290.11 /REP_DB=WormBase Gene ID /WP=CE02081 /TR=SW:Q09338 /GB=AAB93317.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063185(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063185 NCBI Caenorhabditis elegans ZK1290.11 (ZK1290.11) mRNA, complete cds. 11/11 None
SNAP00000002681 ENSEMBL cdna:SNAP chromosome:CEL140:II:7560847:7563096:-1 11/11 None
GENEFINDER00000002692 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7560847:7561516:-1 11/11 None
ZK1290.11 ENSEMBL cdna:known chromosome:CEL140:II:7560847:7561315:-1 gene:ZK1290.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7560843-7561312(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1290.11
Entrez Gene 174228 Entrez gene
SwissProt Q09338 EMBL-EBI
WormBase CE02081 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93317 Hypothetical protein ZK1290.11 [Caenorhabditis elegans] ref|NP_495586.1| ZK1290.11 [Caenorhabditis elegans] sp|Q09338|YOFB_CAEEL Hypothetical protein ZK1290.11 in chromosome II 8.0E-75
blast AAB93317 Hypothetical protein ZK1290.11 [Caenorhabditis elegans] ref|NP_495586.1| ZK1290.11 [Caenorhabditis elegans] sp|Q09338|YOFB_CAEEL Hypothetical protein ZK1290.11 in chromosome II 2.0E-74
blast AAB93317 Hypothetical protein ZK1290.11 [Caenorhabditis elegans] ref|NP_495586.1| ZK1290.11 [Caenorhabditis elegans] sp|Q09338|YOFB_CAEEL Hypothetical protein ZK1290.11 in chromosome II 4.0E-74
blast CAE67489 Hypothetical protein CBG12994 [Caenorhabditis briggsae] 2.0E-68
blast CAE67489 Hypothetical protein CBG12994 [Caenorhabditis briggsae] 9.0E-54
blast CAE67489 Hypothetical protein CBG12994 [Caenorhabditis briggsae] 1.0E-41
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000002692 1 2-24
Sequence
Target Sequence 
>C. ELEGANS:187774_S_AT
gacgcttggagctagcgaggaacgaatgaatatttctggaaagctgcttggcaggaaaaa
agatacttttttaattgttgagaaggctaagccaaatgtaacctgtgctgatccatttac
atttgttatcaaaagtcaagatggatatggttttgcatttggatcggtccaatcttcgga
attaaagtacacagctcaagttgcgctacaatacccaaagaatgaacaatcgcaatctgt
atttttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGCTTGGAGCTAGCGAGGAACGA 75 381 156 Antisense
ATTTCTGGAAAGCTGCTTGGCAGGA 571 15 187 Antisense
GAAGGCTAAGCCAAATGTAACCTGT 617 211 237 Antisense
GCCAAATGTAACCTGTGCTGATCCA 593 277 246 Antisense
GTGCTGATCCATTTACATTTGTTAT 606 479 260 Antisense
TATGGTTTTGCATTTGGATCGGTCC 530 655 301 Antisense
GGATCGGTCCAATCTTCGGAATTAA 25 513 316 Antisense
TTAAAGTACACAGCTCAAGTTGCGC 595 681 337 Antisense
GCTCAAGTTGCGCTACAATACCCAA 144 301 349 Antisense
GTTGCGCTACAATACCCAAAGAATG 546 439 355 Antisense
GAACAATCGCAATCTGTATTTTTCG 239 353 379 Antisense
Sequence Source Affymetrix Proprietary Database