[Home] | [Total List]

[187773_at]

Description Y54E5B.3 /REP_DB=WormBase Gene ID /WP=CE19227 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q9XWF7 protein_id:CAA21715.1
Cluster 6grp_total > 96      4grp_total > 06      6grp_cgc > 68      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 108.8
(0.2)
A 		52
(-3)
A 		121.2
(0.9)
A 		158.3
(3)
M 		106
B 181.5
(2.5)
A 		77.4
(-3)
A 		176.5
(2.2)
A 		191.4
(3)
M 		114
C 92.4
(-1.1)
A 		38.7
(-3)
A 		107.2
(-0.6)
A 		210
(3)
A 		171
avr 127.6
(0.3) 		56
(-3) 		135
(0.6) 		186.6
(3) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 461
1 2 3 4 5 6 range
A 85.5
(-3)
A 		112.9
(-2.5)
A 		113.7
(-2.4)
A 		176.9
(-1.2)
A 		392.1
(3)
P 		289.4
(1)
P 		307
B 47.6
(-3)
A 		132.3
(-1.7)
A 		167.9
(-1.1)
A 		193.8
(-0.7)
M 		324.5
(1.3)
P 		434.4
(3)
P 		387
C 86.1
(-2)
A 		63.8
(-2.3)
A 		12.3
(-3)
A 		180.5
(-0.8)
A 		239.5
(-0)
P 		473.4
(3)
P 		461
avr 73.1
(-3) 		103
(-2.4) 		98
(-2.5) 		183.7
(-1) 		318.7
(1.5) 		399.1
(3) 		326
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 39.6
(3)
A 		11.3
(-3)
A 		31.7
(1.3)
A 		23.2
(-0.5)
M 		28
B 57.9
(3)
A 		19.1
(-3)
A 		40.9
(0.4)
A 		40.8
(0.4)
M 		39
C 30.6
(1.4)
A 		11.1
(-3)
A 		37.4
(3)
A 		35.4
(2.5)
A 		26
avr 42.7
(3) 		13.8
(-3) 		36.7
(1.8) 		33.1
(1) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 15.8
(-3)
A 		40.2
(-1.6)
A 		24.8
(-2.5)
A 		44.9
(-1.3)
A 		118.3
(3)
P 		70.5
(0.2)
P 		103
B 16.5
(-3)
A 		44
(-1.9)
A 		40.8
(-2)
A 		51.3
(-1.6)
M 		131.8
(1.8)
P 		162
(3)
P 		146
C 31.9
(-1.9)
A 		19.5
(-2.4)
A 		3.1
(-3)
A 		36.3
(-1.7)
A 		77.5
(-0.1)
P 		158.5
(3)
P 		155
avr 21.4
(-3) 		34.6
(-2.3) 		22.9
(-2.9) 		44.2
(-1.7) 		109.2
(1.8) 		130.3
(3) 		109
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187773_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.659
Sequence Type Exemplar sequence
Representative Public ID Y54E5B.3 NCBI
Target Description Y54E5B.3 /REP_DB=WormBase Gene ID /WP=CE19227 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q9XWF7 protein_id:CAA21715.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061184(11), NM_061185(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061184 NCBI Caenorhabditis elegans LEThal family member (let-49) (let-49) mRNA, complete cds. 11/11 None
NM_061185 NCBI Caenorhabditis elegans LEThal family member (let-49) (let-49) mRNA, complete cds. 11/11 None
GENEFINDER00000016373 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14828542:14829743:1 11/11 None
Y54E5B.3a ENSEMBL cdna:known chromosome:CEL140:I:14828525:14829659:1 gene:Y54E5B.3 11/11 None
Y54E5B.3b ENSEMBL cdna:known chromosome:CEL140:I:14828542:14829712:1 gene:Y54E5B.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14828472-14829590(+) 99.21 100.0
Public Domain and Genome References
Ensembl Y54E5B.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21715 Hypothetical protein Y54E5B.3a [Caenorhabditis elegans] ref|NP_493585.1| LEThal family member (let-49) [Caenorhabditis elegans] 1.0E-134
blast CAC42382 Hypothetical protein Y54E5B.3b [Caenorhabditis elegans] ref|NP_493586.1| LEThal family member (let-49) [Caenorhabditis elegans] 1.0E-133
blast CAA21715 Hypothetical protein Y54E5B.3a [Caenorhabditis elegans] ref|NP_493585.1| LEThal family member (let-49) [Caenorhabditis elegans] 1.0E-132
blast CAC42382 Hypothetical protein Y54E5B.3b [Caenorhabditis elegans] ref|NP_493586.1| LEThal family member (let-49) [Caenorhabditis elegans] 1.0E-131
blast CAA21715 Hypothetical protein Y54E5B.3a [Caenorhabditis elegans] ref|NP_493585.1| LEThal family member (let-49) [Caenorhabditis elegans] 1.0E-131
Protein Domains
Database ID Description E-Value
Pfam IPR009244 EMBL-EBI MED7 1.2E-121
Pfam IPR009244 EMBL-EBI MED7 1.4E-121
Sequence
Target Sequence 
>C. ELEGANS:187773_AT
ccggtgttgctgagctctacaagaacaaaaataattggaaaaccgagatgaagaagttga
acaggtccgccatagtcgcatttttcgatttggtcgaaattctgattcgcgctcccgatc
acccaatgagagaggagaaaatggtcgatttacacacgatattcattaatatgcatcatt
tgatcaatgaattccggccagttcaggctcgcgacagtgttcgaattttacaagagagac
aaatcgaagaattatcggatatttgcaaggattttaaaaaatatctgcgtgatggtcgag
aagttgtcgatgaccaattccaaatgatccgtgggaagcttccagctccacctcaacctt
cggaactgacacgtgtcaaactgcaagacggagtgcttcatatgcttcaggagacagaag
cttcagatgacgtggaaatgaaagaggaagaaggatcggaatatagtaaaaagaaagcga
ggctggaactattatcaagagaagatggaccaccgagtgttgtacact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGGTGTTGCTGAGCTCTACAAGAA 551 265 206 Antisense
GAAGTTGAACAGGTCCGCCATAGTC 501 335 258 Antisense
TCCGCCATAGTCGCATTTTTCGATT 426 595 271 Antisense
GGTCGAAATTCTGATTCGCGCTCCC 332 503 297 Antisense
GCTCCCGATCACCCAATGAGAGAGG 248 299 316 Antisense
CAATGAATTCCGGCCAGTTCAGGCT 671 181 390 Antisense
TTCAGGCTCGCGACAGTGTTCGAAT 688 685 407 Antisense
ATGATCCGTGGGAAGCTTCCAGCTC 274 47 529 Antisense
TCAACCTTCGGAACTGACACGTGTC 363 631 558 Antisense
CAAGACGGAGTGCTTCATATGCTTC 604 183 589 Antisense
GATGGACCACCGAGTGTTGTACACT 110 407 709 Antisense
Sequence Source Affymetrix Proprietary Database