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[187772_at]

Description ZC581.4 /REP_DB=WormBase Gene ID /WP=CE15241 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O01769 protein_id:AAB54142.1
Cluster 6grp_total > 22      4grp_total > 17      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 22
(-3)
A 		39.3
(-1.6)
A 		27.4
(-2.6)
A 		98.2
(3)
A 		76
B 15.6
(3)
A 		11
(-3)
A 		11
(-3)
A 		12.1
(-1.6)
A 		5
C 5.9
(-3)
A 		15.3
(-1.5)
A 		33.8
(1.5)
A 		42.8
(3)
A 		37
avr 14.5
(-3) 		21.9
(-1.8) 		24.1
(-1.4) 		51
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 114.1
(3)
A 		20.9
(-2.4)
A 		47.4
(-0.9)
A 		56.8
(-0.3)
A 		61.4
(-0)
A 		10.3
(-3)
A 		104
B 45.3
(1.1)
A 		58.8
(3)
A 		15.3
(-3)
A 		34.9
(-0.3)
A 		17
(-2.8)
A 		16.2
(-2.9)
A 		44
C 5.9
(-3)
A 		71.2
(2.4)
A 		78.3
(3)
A 		9.6
(-2.7)
A 		36.5
(-0.5)
A 		9.1
(-2.7)
A 		72
avr 55.1
(3) 		50.3
(2.3) 		47
(1.9) 		33.8
(0) 		38.3
(0.7) 		11.9
(-3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 8
(-2.3)
A 		8.5
(-1.9)
A 		7.2
(-3)
A 		14.4
(3)
A 		7
B 5
(3)
A 		2.7
(-2.5)
A 		2.5
(-3)
A 		2.6
(-2.8)
A 		3
C 2
(-3)
A 		4.4
(-1.5)
A 		11.8
(3)
A 		7.2
(0.2)
A 		10
avr 5
(-3) 		5.2
(-2.6) 		7.2
(1.3) 		8.1
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 21
(3)
A 		7.4
(-1.4)
A 		10.3
(-0.5)
A 		14.4
(0.9)
A 		18.5
(2.2)
A 		2.5
(-3)
A 		19
B 15.8
(1.6)
A 		19.6
(3)
A 		3.7
(-3)
A 		9.2
(-0.9)
A 		6.9
(-1.8)
A 		6
(-2.1)
A 		16
C 2.2
(-2.9)
A 		21.7
(3)
A 		19.9
(2.5)
A 		1.9
(-3)
A 		11.8
(0)
A 		3
(-2.7)
A 		20
avr 13
(1.5) 		16.2
(3) 		11.3
(0.6) 		8.5
(-0.7) 		12.4
(1.2) 		3.8
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187772_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.933
Sequence Type Exemplar sequence
Representative Public ID ZC581.4 NCBI
Target Description ZC581.4 /REP_DB=WormBase Gene ID /WP=CE15241 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O01769 protein_id:AAB54142.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059507
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000015879 ENSEMBL cdna:SNAP chromosome:CEL140:I:6640751:6642647:-1 None
D2092.1b ENSEMBL cdna:known chromosome:CEL140:I:6637893:6645563:-1 gene:D2092.1 A 
NM_059507 NCBI Caenorhabditis elegans D2092.1b (D2092.1) mRNA, complete cds. A 
GENEFINDER00000015893 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6639806:6642647:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6642089-6643546(-) 100.0 100.0
Public Domain and Genome References
Ensembl D2092.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68288 Hypothetical protein D2092.1b [Caenorhabditis elegans] ref|NP_491908.1| D2092.1b [Caenorhabditis elegans] 0.0
blast AAB42222 Hypothetical protein D2092.1a [Caenorhabditis elegans] ref|NP_491909.1| D2092.1a [Caenorhabditis elegans] 0.0
blast CAE67249 Hypothetical protein CBG12689 [Caenorhabditis briggsae] 1.0E-176
blast CAE67249 Hypothetical protein CBG12689 [Caenorhabditis briggsae] 1.0E-162
blast AAK68288 Hypothetical protein D2092.1b [Caenorhabditis elegans] ref|NP_491908.1| D2092.1b [Caenorhabditis elegans] 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR000008 EMBL-EBI C2 domain 2.5E-26
Pfam IPR000008 EMBL-EBI C2 domain 2.5E-13
Pfam IPR000008 EMBL-EBI C2 domain 2.5E-26
Pfam IPR000008 EMBL-EBI C2 domain 2.5E-26
Pfam IPR000008 EMBL-EBI C2 domain 2.5E-13
Pfam IPR000008 EMBL-EBI C2 domain 3.8E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491908.1 2 723-745,814-836
D2092.1b 2 723-745,814-836
Sequence
Target Sequence 
>C. ELEGANS:187772_AT
atgttacacattcttcgtcacatccctccatttttatcaactttatgtgacggaatgtct
tgaaaatgttatttttaatgttttggtgaatggtcagagcatcaattctagatggaaaga
tgcagagaaaacaatcacatccttccccttccattttccccaaacattttttcaacaacc
ccatattttgactctccattttctatttttcgtgtttgtctctgtcactttagttacagt
ttttaagaaaccaaaatgcgaatttccacactcgctcgcatatttgtggtatttcgtcga
aggaaacggcgaaaaattcgacgagagcccacttttctctcgtatcgaatcagaagtttg
tacaaaaatctggacctctacatccgagaaaaaccatcaaaatcataatcatccgtctcc
acgaaaatctccaggattccggtttagaagaatatttgatacttttacatttacaaagtc
gctaaaaccacaatactctttggaaaataatgtgagtatttattttattttgatagttga
caagttcacagggtgcacgggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTACACATTCTTCGTCACATCC 560 47 36 Antisense
AGAGAAAACAATCACATCCTTCCCC 534 69 159 Antisense
CCATATTTTGACTCTCCATTTTCTA 373 271 216 Antisense
TCTATTTTTCGTGTTTGTCTCTGTC 368 615 237 Antisense
TGTTTGTCTCTGTCACTTTAGTTAC 357 559 248 Antisense
AAATGCGAATTTCCACACTCGCTCG 543 119 289 Antisense
ACTCGCTCGCATATTTGTGGTATTT 224 99 305 Antisense
CCCACTTTTCTCTCGTATCGAATCA 25 257 363 Antisense
AAATCTGGACCTCTACATCCGAGAA 681 115 401 Antisense
CAAAATCATAATCATCCGTCTCCAC 191 191 433 Antisense
GACAAGTTCACAGGGTGCACGGGCA 448 365 574 Antisense
Sequence Source Affymetrix Proprietary Database