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[187771_at]

Description F43E2.6 /REP_DB=WormBase Gene ID /WP=CE10346 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O02091 protein_id:AAC71128.1
Cluster 6grp_total > 05      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 9.5
(-3)
A 		12.6
(-2.6)
A 		10.8
(-2.8)
A 		57
(3)
A 		48
B 9.6
(-3)
A 		15
(-1.3)
A 		9.8
(-2.9)
A 		28.9
(3)
A 		19
C 50.2
(0.6)
A 		30
(-1)
A 		5.4
(-3)
A 		79.1
(3)
A 		74
avr 23.1
(-1.1) 		19.2
(-1.6) 		8.7
(-3) 		55
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 47.1
(3)
A 		9.1
(-2.2)
A 		8.6
(-2.3)
A 		24.9
(-0)
A 		3.1
(-3)
A 		6.4
(-2.6)
A 		44
B 36
(1.3)
P 		48.6
(3)
A 		7.2
(-2.6)
A 		8.5
(-2.4)
A 		44.3
(2.4)
A 		4.3
(-3)
A 		44
C 45.6
(-0)
A 		41.3
(-0.8)
A 		63.2
(3)
A 		28.4
(-3)
A 		39.7
(-1.1)
A 		32.2
(-2.3)
A 		35
avr 42.9
(3) 		33
(0.9) 		26.3
(-0.5) 		20.6
(-1.7) 		29
(0.1) 		14.3
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 3.5
(-2.1)
A 		2.7
(-3)
A 		2.8
(-2.9)
A 		8.3
(3)
A 		6
B 3.1
(-1.7)
A 		3.7
(-0.8)
A 		2.3
(-3)
A 		6.1
(3)
A 		4
C 16.6
(3)
A 		8.6
(-0.3)
A 		1.9
(-3)
A 		13.3
(1.7)
A 		15
avr 7.7
(1.7) 		5
(-0.7) 		2.3
(-3) 		9.2
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 8.7
(3)
A 		3.3
(-1.2)
A 		1.9
(-2.2)
A 		6.3
(1.2)
A 		0.9
(-3)
A 		1.5
(-2.5)
A 		8
B 12.5
(1)
P 		16.2
(2.3)
A 		1.8
(-2.9)
A 		2.3
(-2.7)
A 		18
(3)
A 		1.6
(-3)
A 		16
C 16.9
(3)
A 		12.6
(0.7)
A 		16.1
(2.6)
A 		5.7
(-3)
A 		12.8
(0.8)
A 		10.8
(-0.3)
A 		11
avr 12.7
(3) 		10.7
(1.5) 		6.6
(-1.5) 		4.8
(-2.9) 		10.6
(1.4) 		4.6
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187771_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4988
Sequence Type Exemplar sequence
Representative Public ID F43E2.6 NCBI
Target Description F43E2.6 /REP_DB=WormBase Gene ID /WP=CE10346 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O02091 protein_id:AAC71128.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063141, NM_063140, NM_063142
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000044503 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7366426:7370224:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_063142 6/11 Cross Hyb Matching Probes None
NM_063141 5/11 Cross Hyb Matching Probes None
NM_063140 5/11 Cross Hyb Matching Probes None
SNAP00000044494 5/11 Cross Hyb Matching Probes None
SNAP00000044495 2/11 Cross Hyb Matching Probes None
F43E2.6a 5/11 Cross Hyb Matching Probes None
F43E2.6b.2 5/11 Cross Hyb Matching Probes None
F43E2.6b.1 5/11 Cross Hyb Matching Probes None
F43E2.11 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7367395-7371201(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T34042 hypothetical protein F43E2.10 - Caenorhabditis elegans 4.0E-76
blast T34043 hypothetical protein F43E2.6 - Caenorhabditis elegans 7.0E-72
blast AAN84799 Hypothetical protein F43E2.6a [Caenorhabditis elegans] ref|NP_495541.2| F43E2.6a [Caenorhabditis elegans] 8.0E-53
Sequence
Target Sequence 
>C. ELEGANS:187771_AT
gtttggatacgagcctttcccaacaacttgtggccggaaatatatattttttggagaaga
aatggcaattcttccgaacatcttaagttacatgaaacaactctccaaggcaaaaaagtt
ttcaactctatttaaaggtcttgattctgccatctgtgtgcatattataggtggaacagt
tgatggatacataattgatatttcaatcatttcgaaagaaactgacactaatcaaacatt
gacaacttgcattttactaacaaaggaaatatgggcaagaccaaagcggagattcaaaaa
gaggaacgagacaaccgatacaaccgaagacacgctgaaagagaaagcgctcaggcagag
caagaaaataaatgttttaaagtttttcgaacattccaaaaatgtaggcgacgagactga
tcgctccaatgaaatcgatgagaattgtgaagacatctcagaaacatcggcaaatggcag
caatgatactaacgctatgcaacaaaatgtggctcaagctaagactgtttctgatcacaa
aatggacaacttcatgcccatccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGGATACGAGCCTTTCCCAACA 642 425 294 Antisense
TTCCCAACAACTTGTGGCCGGAAAT 103 697 310 Antisense
AATGGCAATTCTTCCGAACATCTTA 200 163 354 Antisense
ACATGAAACAACTCTCCAAGGCAAA 346 105 383 Antisense
AAAGGTCTTGATTCTGCCATCTGTG 527 121 427 Antisense
GATTCTGCCATCTGTGTGCATATTA 186 433 436 Antisense
GGAACGAGACAACCGATACAACCGA 109 531 596 Antisense
GGCGACGAGACTGATCGCTCCAATG 56 539 700 Antisense
GCAATGATACTAACGCTATGCAACA 657 321 773 Antisense
GTGGCTCAAGCTAAGACTGTTTCTG 616 491 802 Antisense
AAATGGACAACTTCATGCCCATCCC 368 121 833 Antisense
Sequence Source Affymetrix Proprietary Database