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[187768_s_at]

Description F13B9.1 /REP_DB=WormBase Gene ID /WP=CE04378 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q19386 protein_id:AAB52627.1
Cluster 6grp_total > 07      4grp_total > 53      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 475
1 2 3 4 range
A 850.8
(3)
M 		612.4
(-0.6)
A 		639.6
(-0.2)
A 		450.8
(-3)
A 		400
B 862.6
(3)
P 		673.8
(-0.8)
A 		567
(-2.9)
A 		563.7
(-3)
A 		299
C 731.2
(2.1)
A 		743.4
(2.3)
A 		790.6
(3)
A 		387.9
(-3)
A 		403
avr 814.9
(3) 		676.5
(0.6) 		665.7
(0.4) 		467.5
(-3) 		347

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 805
1 2 3 4 5 6 range
A 1053.3
(3)
P 		856.5
(1.2)
P 		392.6
(-3)
A 		637.3
(-0.8)
A 		588.9
(-1.2)
M 		625.2
(-0.9)
M 		661
B 826.7
(3)
P 		667.6
(0.5)
P 		545.5
(-1.5)
P 		686.4
(0.8)
P 		450.3
(-3)
A 		461.3
(-2.8)
P 		376
C 1140.7
(3)
P 		694.9
(-0.3)
P 		789.7
(0.4)
A 		562.4
(-1.3)
A 		471.6
(-2)
A 		336.1
(-3)
A 		805
avr 1006.9
(3) 		739.7
(-0) 		575.9
(-1.9) 		628.7
(-1.3) 		503.6
(-2.7) 		474.2
(-3) 		533
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 244
1 2 3 4 range
A 309.8
(3)
M 		132.9
(-1.4)
A 		167.2
(-0.5)
A 		66
(-3)
A 		244
B 275.1
(3)
P 		166.4
(-1.2)
A 		131.4
(-2.6)
A 		120.1
(-3)
A 		155
C 242
(2)
A 		213.7
(1.2)
A 		275.5
(3)
A 		65.4
(-3)
A 		210
avr 275.6
(3) 		171
(-0.3) 		191.4
(0.4) 		83.8
(-3) 		192

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 337
1 2 3 4 5 6 range
A 194.2
(-0)
P 		304.6
(3)
P 		85.5
(-3)
A 		161.6
(-0.9)
A 		177.7
(-0.5)
M 		152.2
(-1.2)
M 		219
B 287.6
(3)
P 		222.2
(0.5)
P 		132.5
(-3)
P 		181.8
(-1.1)
P 		182.9
(-1.1)
A 		172
(-1.5)
P 		155
C 422.8
(3)
P 		212
(-1.1)
P 		201
(-1.3)
A 		113.1
(-3)
A 		152.6
(-2.2)
A 		112.5
(-3)
A 		310
avr 301.5
(3) 		246.3
(1) 		139.7
(-3) 		152.2
(-2.5) 		171.1
(-1.8) 		145.6
(-2.8) 		162
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187768_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16293
Sequence Type Exemplar sequence
Representative Public ID F13B9.1 NCBI
Target Description F13B9.1 /REP_DB=WormBase Gene ID /WP=CE04378 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q19386 protein_id:AAB52627.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076999(11), NM_076998(11), NM_001029386(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076999 NCBI Caenorhabditis elegans F13B9.1a (F13B9.1) mRNA, complete cds. 11/11 None
NM_076998 NCBI Caenorhabditis elegans F13B9.1b (F13B9.1) mRNA, complete cds. 11/11 None
NM_001029386 NCBI Caenorhabditis elegans F13B9.1c (F13B9.1) mRNA, complete cds. 11/11 None
SNAP00000009671 ENSEMBL cdna:SNAP chromosome:CEL140:X:8287198:8294054:1 11/11 None
F13B9.1a ENSEMBL cdna:known chromosome:CEL140:X:8287198:8294437:1 gene:F13B9.1 11/11 None
F13B9.1b ENSEMBL cdna:known chromosome:CEL140:X:8287198:8294430:1 gene:F13B9.1 11/11 None
F13B9.1c ENSEMBL cdna:known chromosome:CEL140:X:8287198:8294054:1 gene:F13B9.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000009674 7/11 Cross Hyb Matching Probes None
GENEFINDER00000009672 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8287196-8294053(+) 99.35 100.0
Public Domain and Genome References
Ensembl F13B9.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM54193 Hypothetical protein F13B9.1a [Caenorhabditis elegans] ref|NP_509400.3| F13B9.1a [Caenorhabditis elegans] 0.0
blast AAM54194 Hypothetical protein F13B9.1b [Caenorhabditis elegans] ref|NP_509399.2| F13B9.1b [Caenorhabditis elegans] 0.0
blast AAQ81277 Hypothetical protein F13B9.1c [Caenorhabditis elegans] ref|NP_001024557.1| F13B9.1c [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:187768_S_AT
tggacctctcacaatggcatcatcaccccccacactgccacctgtgcaatctgttccagt
atcgtctaagcctgcgcctccatcggctgaaaatcaggctcagaattctacgtctcccca
gcaaccaacacaagaacaaggacaagaaacccaagatagaaatccggatcaagggggatg
gctgaaatcaattcaaagcaccgttcaaaacaccgttcaaaaagcgaccgggaggaatcc
aatgaatcttccagaagaccgaaatccgtcaattgtgtgggatagtactcaaaacaaata
tgtcggagctggagtagagcaagaaccagttgctccgcctccaccaatggcccaggctgg
acctgctccgccagtggggggaggtggattaagagctgctagaggtgcttctcgctatgc
cagagttggaggcacatcgtcgtctgcttcgcaagctcccgctggaatgatggctccggc
accaccaacagcgaattttggattcattcctgctccagttgacaatgataatgattccgt
tgatccattcagtggtcaagccaacccaacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGACCTCTCACAATGGCATCATCA 700 547 4185 Antisense
CCACCTGTGCAATCTGTTCCAGTAT 458 273 4222 Antisense
TGTTCCAGTATCGTCTAAGCCTGCG 616 561 4236 Antisense
TGCGCCTCCATCGGCTGAAAATCAG 531 583 4257 Antisense
ATCAGGCTCAGAATTCTACGTCTCC 706 29 4277 Antisense
GAGCAAGAACCAGTTGCTCCGCCTC 135 389 4501 Antisense
CTGCTCCGCCAGTGGGGGGAGGTGG 494 229 4547 Antisense
CAAGCTCCCGCTGGAATGATGGCTC 622 185 4636 Antisense
ATTCATTCCTGCTCCAGTTGACAAT 417 11 4686 Antisense
GATTCCGTTGATCCATTCAGTGGTC 374 433 4717 Antisense
TTCAGTGGTCAAGCCAACCCAACTA 424 685 4732 Antisense
Sequence Source Affymetrix Proprietary Database